Detail information of Os04g0310900_circ_ig.3


General Information
CircRNA Name Os04g0310900_circ_ig.3
ID in PlantcircBase osa_circ_023388
Alias NA
Organism Oryza sativa
Position chr4: 14090512-14093789  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0311100_circ_igg.1 Os04g0310900_circ_ig.2 Os04g0310900_circ_ig.4 Os04g0311100_circ_igg.5 EPlOSAG00000049403_circ_ig.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTTTGTGCTGCTTCTTTGTCAGGTTACTGAAGGTGGAAGAATCATTGTCACAGGAGCTGGCG
ATTGAACGTGATAAGAACAAATCGTTAACAGAGAGGgtcaggaaatgctcatcgaattggatat
tctgggacacgtgctggcagatccaatgaaacagaaggtaaatgagccatatgattgttcgaca
ttgctatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGGAAATGCTCATCGAATTGGATATTCTGGGACACGTGCTGGCAGATCCAATGAAACAGAA
GGTAAATGAGCCATATGATTGTTCGACATTGCTATGGCTTTATAGTATAGATATGCAACTTAGT
TTCTTTAATATTTTGATATTTTGTTATTACTTACCTTGAGTAACAAAAGTTAATAGAGTATCAA
AGTTAACATCTTAAAAAGTTTGTAATGTTGCTTCATTTGTTGGGTAATTGGGTTTTCAAAGTGC
TGCGTTCCTTTTTTGACTCTCTCAAGTTCTGTCAGGTAGTTTGTCACATTATGTCAATTGGACA
TACCAAAATGGATAATAGTATGCAGAGGATGTTGGATCGAAATGATTTCACTATGAGTGTCCAA
TCCATTTGTGCAAATTAGATACGTTTCCCATTGAATCTCTTTTTCTTATGCTCAAACAAAGCAT
TCTGTTTCTTTACTAACAGAAATGATGAAAATATACAAAAATAAGCATGACACATTGTGTGCAG
TGCCTGTCAGTGGAACTTAGATGACACAGTATCCTTGGTGTACCCCCTGATAACATTTCACTTA
CTAAATAGAAAAAAATGATATCGGAAAAACTCGATGGGGAACATGATAACTTTAGAGTTTATAC
ATGCGGTTGATTAGATAATTGACAATAGTTTTTAGTAGAGTCATCTGTGTAAAGACAAGGAATA
ATAGCCCTATTTCACCTTATCATTCTTCTTGTGCTGGTAATAAGGAGGCCATATATTGGCAAAC
ATATATGATTTCTGAATGGTGTTCATAGATATGAAACATCATCATAAATGCAATTTCATTGTGC
ACTCCATCCTGAGCACCTGTGTTTTTAACAAGTATTCTATAGATATGAATTGGTGTGCACATCC
CTCTGCTAAGGCTTGCTTATCCCCGTTACGAATATGTGATGATCGAACTTATTTATTTGCCTTC
GATCACTAATATTAAAAAATGTTGTGTAATTTTGGCATTAGGTAATGGTAGCATTAGTGTATGA
AAATGTCATAATGCAACATTTTTTATAATTTTTTAACTCTTATGCCAAAAGGATGATCAAAGTT
ACATCTTCTGACACTGTCAATGTTCAACTGTCATATTATTGACTGAAGGGTATGAAACTTTTAA
TGGGCATGAAAATTTGTTGTTCTTTCACTTCAATTGTAATTATTTTTAGAGATAAGTAGCTATT
ATTTTACAAATATGGCCTTCTTTGGACAGAGGACGCCCCTGAAGTTACCCAAAGTGCACAGCAA
TCACCTTACTCTACTGGAAAAAATTATGGAAAATCAAATAAAAAGCAATCGCCTTACTCTACTG
GGAAAGATAATGGAAAATCAAATACTAAATCTGGGAAGGCAAGCACGTCATTTCATACTCAGCG
AAGAACTGATAAGTCTGCAACGACTAAACAACCTGGAAGATCAATAATGTATGGGCTTTCAGAT
ACCAGTGATGAAAGTGATTCTGAGTTTGTGGGCGCCCCAACTCCAACAAGTTCAAGATCTCATA
TCCTGAATCCACATAGAAAATCTTTCCAGAATGGGACTGCTTTGGCAACACCTCCATCCAATGG
ACGGACAGAAAGAGAGAGAAACAAAACTGCATCCCAGCCTGTGGTAATTTTGTTCTCCCTCTGA
CCTTTTCTTTGTACTGTGAAACTTTTATTTTATTGTGCTTATATTTAGGTACACACTTATTTGC
AGATGATAATTAGGCCATGTTTTGCTGGAGTGAACATTGTACCTAGTCTACAGCAGAAACTCAT
TAATCTAATATTACAGCTGATTTGAGGATTTTTCTTGTAGTAATTAGGAAAAAAGCTTCTTAAT
CTGTTTATACCTAGTTATCCTATGGTATTTGCTTTTGGGATTACTAGAGGATTTGCTTTTATAA
TTACTTGCTCATTTAGGTAAGTTTGGGGTTTAAATGTGGATATATTGAAGAATGGAAGTGTTAG
CTGATAATCTTGGAGGAGCAATAATTCCAACATGGATCGCTCTCATTGTTGACTCTGAAATTAG
TGTGTTGAGCTAATCGCTCTGCTGTAGAACTGTAAAGGCTGGTACAAAAACATGGGGCAAGCAC
TATCTTTCCTCCAAAAGAATAGTGTTTAGTAGATTAATTCCAATTCGAAATACAATCTGCAGAG
TACTTTTGAAAATTACAGTGTTTAGCTCTTTTATTTATATAAAGTAATGCACCTTTAACATGAT
TTATATATATATAATCTGTTGGTTATCATCAGTGTATGATAGATGACTCCATATTTTATATATG
GTTGTTATTCAAGTACATAGTCTCAGGATTTATCTCTGATGTTTGCTCTGCAGCAACTTAATGC
AACAAGTAATGGGGATTATACTATTGATGATCATGAGACTATTATCAAGCAACTGAGGGGCGAA
AACTCATCGTTGAAGGAAAGGTAATATATAGCAGGATTCAGCTTCTACTTTTCATGTCAGTATT
TGAATGAAATAACAGTGATAACTAAGGATTACCACTATTGCCTACTGTAATGGTCTTTCTTTTC
AGTTCAGATTGTTTTCATCTCTTATACGCATATTTAGGCCCCACTTATTTTTCATATTTTCAGT
CACAATTTATAATAATGAAAACTATAATTAATCTAGAGAATCAAGAACTCGAGATATGCATATT
GAGGAGGATGGGCTAAGTATATGGGTTAACATGTATACGTACTAATATTTTTCAAACAAAAAAA
AATGGAGGTGCAACTGGACTTACCCCATGGTCCTGTTTTTTCTCTACCCCTTTTAATGAGATGC
AATTCTTCATGATCCAAACGTAATAAATTCAGGTAACCTGTTTGTATGTGCCCTATTCCAAATG
GGTGGGTTGTAGGCATTATGTATTGTGCTAGTTTTTCTGAAGAAATCTGTCAAGTACCAATTGT
AGCCCTAACTCAGTCTAAAACCAGTAAACTATACAGAATGTAGTCAAAACTATGTATATGCTAT
TATATATACTACATTATGCATGATTTAAGACCATCCAGGTACAGCCATCCTGAGCAGTTGAATA
TGATTTGCCGTTCTCGTTTTTCTTTGTGAAACTTGCAGTAACATTTTTTCCCACAGTTTACTAA
GGTATGAAGTTTTATCACGAGAATGTTATAAAATGCCTTTGCTCCTTTGTGCTGCTTCTTTGTC
AGGTTACTGAAGGTGGAAGAATCATTGTCACAGGAGCTGGCGATTGAACGTGATAAGAACAAAT
CGTTAACAGAGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.09105241
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR395n osa-miR5497
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017