Detail information of BGIOSGA011991_circ_g.9


General Information
CircRNA Name BGIOSGA011991_circ_g.9
ID in PlantcircBase osi_circ_013962
Alias Chr03:4254472_4255418(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4731441-4732387  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA011991
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.4 BGIOSGA011991_circ_g.5 BGIOSGA011991_circ_igg.1 BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.4 BGIOSGA011991_circ_g.5 BGIOSGA011991_circ_igg.6 BGIOSGA011991_circ_g.7 BGIOSGA011991_circ_g.8 BGIOSGA011991_circ_g.10 BGIOSGA011991_circ_g.11 BGIOSGA011991_circ_g.12 BGIOSGA011991_circ_g.13 BGIOSGA011991_circ_g.14 BGIOSGA011991_circ_g.15 BGIOSGA011991_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA011991-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAATTGCATGCTCCTTTGGCCGATGATCTTATGGATTTCTATGAACGGATGGGTGATACGCTA
GCTATTCAATATGGTGGCTCTGCTGCTCACAACAAGgactcgtgagaagaaacctcgtgaatct
ttgctccgtgcagaattcgcaaaggctatacattatattaacaaggggctgccagatgacaaac
gtctaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACTCGTGAGAAGAAACCTCGTGAATCTTTGCTCCGTGCAGAATTCGCAAAGGCTATACATTAT
ATTAACAAGGGGCTGCCAGATGACAAACGTCTAAAGTTTTTACACATGGATCTGAGTAAGCTTT
CTAGAAGGTAGTGTATCGTACTCCAAGGAAATCTTATATCCAAGCCATTAGGATTCAAGCTTGT
AATTACTTGTAAATTGCCTACGATGTTAAGTACTAAGTGCTATTTACAGGAAAGGTACCAATGT
GCTTTCGCTGTTGAACAAGGTAGCATCAGATGTGTTGGATCTAACTGACTTCCTCCACTGTGAG
ATAACTACATCAAAGTATGAGGATGCATCAAGGTAACATTTGGCCTACTTAAGAGTTATAAGAG
TTATATTAAAATTTTGCCTGGCCACCAGAAACTACCTGATGTTGTTTGTCAAAAAATGTTCCTT
CATGATGTTACCCTGTAACATATTCATTCTTTGGATTAGTCAAAGCTGTGCCTTGGAGAACAGT
AGAACACACAAATAAGGCAGCTTTTGGAACAATTGGGAGTAGCTGCTCTCCTATTTGGTCTTAT
CTTATGAGCTCACTTAACAGTACTAATGCATTTTTTTTCTTTTTAAATGCATCAGTGGACAAGG
AGCTGTTGCCAACTCAGGTGACATCGAAAACATCCAGGATCAAAATTTATGTGCGACTAAGCTA
GTACCTCTTTTACTGCAAAAGGGTGTCCTCAGGACTAACTGCATAGACTGCTTGGACCGCACAA
ATGTTGCACAGTTTGCGTATGGCTTAGCTGCTTTAGGGCGTCAACTTCATGTGCTCCAGCTCAA
TGAAACCCCTACAATTGAATTGCATGCTCCTTTGGCCGATGATCTTATGGATTTCTATGAACGG
ATGGGTGATACGCTAGCTATTCAATATGGTGGCTCTGCTGCTCACAACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021