Detail information of BGIOSGA011991_circ_g.4


General Information
CircRNA Name BGIOSGA011991_circ_g.4
ID in PlantcircBase osi_circ_013959
Alias Chr03:4274395_4275818(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4729803-4731225  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA011991
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.5 BGIOSGA011991_circ_igg.1 BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.4 BGIOSGA011991_circ_g.5 BGIOSGA011991_circ_igg.6 BGIOSGA011991_circ_g.7 BGIOSGA011991_circ_g.8 BGIOSGA011991_circ_g.9 BGIOSGA011991_circ_g.10 BGIOSGA011991_circ_g.11 BGIOSGA011991_circ_g.12 BGIOSGA011991_circ_g.13 BGIOSGA011991_circ_g.14 BGIOSGA011991_circ_g.15 BGIOSGA011991_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA011991-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGTGAAACCGGATGTAGACTACAAGACAACTCGCCTTCATTTTGAGAACCTTGCACTTAGA
TATGGGAACCCAATAATTATCTTAAACTTGATCAAGgatataaacggctcctttgctcggtcga
tctctcgaaagacttcttcttcagctactcttacaatatcatgcgcagccttcagaagaacata
actgacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATAAACGGCTCCTTTGCTCGGTCGATCTCTCGAAAGACTTCTTCTTCAGCTACTCTTACAA
TATCATGCGCAGCCTTCAGAAGAACATAACTGACAAGAATACTGGGCAAGTTGTTTATGAGACA
ATGTTTGTTTGGAACGAGTTTCTGTCTCGAGCTATCCGGAACCATCTCAAGAATACAACGTGGA
CTGTTGCCTTAATCCATGGATTTTTTAAACAGGTATTCTGCTGCAACATTCTAAGTCTCCGATA
CTGCATTTGATGCGATCCATTCTTTTCATCTCTAATTGATGAGCTTATGCATATCCAGCACTGT
CTATTCATCAACGAAGACCACAAGTAGGGATACTGCTAACTCAATGCCATCCCACTAACTTTTG
TGTTTTACTCCACAATGTGTGACCTGACATGTAGTGAAAGCTCGAAATAAAGGGTTTGCAAAAG
CATGGCTTTGTATAACCTGCTGACATTTATCAGTTTGAGCTTCTTGAGGCTTTCCCGAGTCGAA
AATTTTGCTCGTAAGTCTCAGCAGACTGTTAATGCTTTTCCTAAGTTGTTAAATTCCCCTTTGT
GCAGTCTTAGCAAACCAATGCTTAGATGTGAAATTACAGCGCTATTTATACTTATCTGTAATGT
TTATTAAACGGTAAGCGTTGTGCCGTTGAGGTTCTTTGGTCCTGGTTCAAGACCTTTGAATTAG
GACATGTATGATTGGCAGTTCTAAATGTTTCTGATAAATAGGAACTTCTTATTGCTACTCTATT
TGCATTTTCATTATGTAAGTACTGTGTTTCATACTTTCATCTGTCAAGTATTATACACAGAGCC
ATGCTAAACATATTTTGTTGCACAGTCAAAGCTCTCAGTAGCTGGGAAGGAATTCTGGTTGACA
CTTATAGCAGGCGCTCACGTCATTTTGCTGGAACCAGGTTTGCATTACAATCCTTTGGGTTTAG
CACCCTAATTTATGTTGAAAAGAATGGAGCCTAAACAATGTAATCTATGCCGGCTGATCTTACA
ATGTTAATTTTGCATGTCATTTTCAAATACAGATTCTTGAAAAGAGGTGTTAATGAAAAGGGTA
GGGTTGCCAATGATGTTGAGACTGAACAAATTGTTTTTGAGGACACACCAGATGAAATACCACA
TCAGATATCATCTGTTGTACAACATAGAGGATCCATACCTCTTATATGGTTTCAGGAAACTTCA
AGACTCAACATTAGGCCAGATATCATACGTAAGTTCTAGACTGTCAGTCTGTCATGCATTTGCC
ATCTGTAGACTGTCTTCTCTAATACTCCAATCACCTTGCTACCTGCAGTGAAACCGGATGTAGA
CTACAAGACAACTCGCCTTCATTTTGAGAACCTTGCACTTAGATATGGGAACCCAATAATTATC
TTAAACTTGATCAAG
Conservation Information
Conserved circRNAs osa_circ_018226
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021