Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA011991_circ_g.5 |
| ID in PlantcircBase | osi_circ_013960 |
| Alias | Chr03:4252833_4257333(MH63RS2), Chr03:4274395_4278895(ZS97RS2) |
| Organism | Oryza sativa ssp. indica |
| Position | chr3: 4729803-4734302 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | ei-circRNA |
| Identification method | CIRCexplorer2, CIRI2, CIRCexplorer2 |
| Parent gene | BGIOSGA011991 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.4 BGIOSGA011991_circ_igg.1 BGIOSGA011991_circ_g.2 BGIOSGA011991_circ_g.3 BGIOSGA011991_circ_g.4 BGIOSGA011991_circ_g.5 BGIOSGA011991_circ_igg.6 BGIOSGA011991_circ_g.7 BGIOSGA011991_circ_g.8 BGIOSGA011991_circ_g.9 BGIOSGA011991_circ_g.10 BGIOSGA011991_circ_g.11 BGIOSGA011991_circ_g.12 BGIOSGA011991_circ_g.13 BGIOSGA011991_circ_g.14 BGIOSGA011991_circ_g.15 BGIOSGA011991_circ_ig.1 |
| Support reads | NA |
| Tissues | root, leaf, panicle |
| Exon boundary | No-Yes |
| Splicing signals | GT-TA |
| Number of exons covered | BGIOSGA011991-TA:13 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osa_circ_018230 |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhou et al., 2021 |