Detail information of Os03g0231750_circ_ag.2


General Information
CircRNA Name Os03g0231750_circ_ag.2
ID in PlantcircBase osa_circ_018727
Alias Os_ciR1543
Organism Oryza sativa
Position chr3: 6955851-6960108  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0231700_circ_g.3 Os03g0231750_circ_ag.1 Os03g0231750_circ_ag.3 Os03g0231700_circ_g.4 Os03g0231800_circ_g.1 Os03g0231800_circ_g.2 Os03g0231800_circ_g.3 Os03g0231800_circ_g.4
Support reads 19
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCGATCAATTTCAGGTAGCCACCAGGTTGTAACAGTTCACCGACAATTCTATCAGGCTCTGT
TAGGTCTCTCTCTATAACATGCACACGACGGCCATCctttccgagcgtgtaggcgagcgcagat
ccggcgaccccggcaccaacaatgacgatgtccgtccggtcacccccatcgccgccaacaaccc
ggcagcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCCGAGCGTGTAGGCGAGCGCAGATCCGGCGACCCCGGCACCAACAATGACGATGTCCGTC
CGGTCACCCCCATCGCCGCCAACAACCCGGCAGCCACCCTCCGGCGCGACCTCCCGTTGGCGGC
GGCGGCGCCGCCACCCCATCTTCACTGCGACGAGGAAGGCCGCCGTGAGGAGCGTGGCCGCGGC
GAGGCCAACGAGCTGCCCGGCGCCGGCGACCGCATCCATTTCTTGCTGCTCTGCGTGCGTACGT
ACGTGGGTGGGTGGAAGCTTAGAGAAGTGCAAGCGAGGTGACGGGAGACTACGTTTTATGGGAG
AAGAAGTGAGCTGAAAAAAGGCCGGACCGCCGCTGATTAGCAGCTGGCAATGGCATCGTCAGCT
TTCGCTGGCGTGGCTCGTGTTGGCAGAGCTGGAGCTGCTTTGCGCAACAGGAGTCAACGTGATT
CAGCGAGCAAACGGTAGCCGTCCATCTCGCCCCCGCCACACGAATCTCGAGGCCGGAAAACCAT
GTCCGGCTCCCAGTTTTACAGGCTGTGGCCATTGCATTACCACCTCTTCTTCTGCCGCTACAGT
CCGAGATCCCCAGGCACGGATCTTGGCGCTTAATGAAGTGATAATTTTTACTGGTTATTAGTAG
GTGGCAGTCTGGCAGACATGCCCCTTGGCCCTTGCCATATGACTACTACTTGCAGGAATTGTTC
GTCGGATGAAAGAATGCCATGAATATCATAGATACCATGGCTTTATTTAGTGCTGTGGACCAAG
CAACTTTGCATAAAAGAAACAGTAGCAGACAGAACAGACAGGAGGAGCAAAGACTGGCAATCGC
CGTCGCCGGAAGCCAAACAGAAGATGAAAATATTAAATGGTACAGATCGCAGATCGTGGGCCTC
TTGGCATGTTGGACCATAGCCATTCACAGTGCTCCGACGTGTCATTCGGCCATCGCTCGACACG
TCGGAGATTCGCAGCCAGCTAGGCGTCACGCGCGACCAAACCAAGTCCGCGGAGCATACTTTGG
CCACCCGTTCTTCTGCAACTATCTGACAACTCGAGGGCGCGCGGCGTGGGGGAGAACGGCGCGG
CCGCGTTGTGGAGGTCGTGGCCTCGCCCTTCCTCCCACGACCCCCTTCGCGGGGAGCTCGAGCA
GGAGCCCAGCGGCGGCGGCGCAGCCATGGAGGTAGTCTTACCAGGTAAACCGGCGAATGACGGC
GATGACGACCACGACTTCACCCATCCCGATCTGCGCCCCCTTCGGGAGTTCGCCGGCCGTCTCG
ATCCGTGGCGCCGGGAGCTCGCCGGCAGTCTCGATCCGTGTCGCTGTGAGCTCGCCGGCCGCCT
CGATCTCACCCATCCCCATCTCTACGTCCTCCGGGATCTCGTCGGCCCTGTCCCACCTCGATTT
GCGCCGCCTGGAGGAGGAGGAGGAGGAGGAGAGGAAGCAGCAGTAGCACGGGATCGATCTGAAG
AAGCGGCGGAGGAGAAGGAGCAGCGGCACGGGAGAGAGAAGGAGCAGCGCACGTACGGGAGATT
GATCGATTTGCTCGGGGAGAGAGATGGGTGGGGAAAGGTATTCCCGTGGTGGGCCCAGCGTGAG
AAAAAAAAATCTGTTATGGACCCCACCCAAAGCTACACGCACTGGGGAGACAGGAGCTTCGTCT
GTTTTTTGCCTATGTGGAGGCTGGGCTTCTCGCTGAGACGGTGGCGCATTGCTAATGCCCTAAT
GATGTTGTTTACTAGCAAACACAGTTGTATCAATCAATCACACACAGGAGTCCTACCCAATGGA
ATTCAGTGGATTAGCAACGCACCCAGTTAGAGCAAAGACGCAATCATGATGAATTCATGGGGGA
TATACAGCTTAAGGATTAGCAGTCGACATGCATCCCTGACGGAACAACGAAAGTGGCAAGTGTA
CAGGGAATGTGACGGTGTATACAGGTCCCCTCGTTCCATTAGAACAACAGCACACACAACCTCA
CGGCCTGACGACTACTACCAATTACACAGGAAAATTGCCATCCACGAAAAACATCCGCCGATCA
GGACAGTGGCAGGGATTTTCTCTTCGCTTCTCCTTTCATTTTCCCCCCTTACTCCATTGGACGA
GGAGCACGATAATAGGCAGGGACAGTGGCGGGGAAGAACATATGCCTCACACCTTCAGCTTTGA
TGATGGGGAAAATTATACCACATGCACTCTGCAGTGAAAACTCTGGATTAGCAATAGTATAGAA
ACGGGAAAAAAAAGTCTATTTAGGGTTTAGCGTTTAGGGTTTAGGATAGGGAATGAAAAAATTG
TATAGAAAACTGTCCATGAATGGTACCACGATGGAAATAGTAAAGTTTGAAAACTTTGAAGAAT
AAGATTTGAGATACTCACGGAAATCAGTCTTACGCCGATCCACATGCGTTTAGGTGAAGGGAGG
GGAAGCATTAGGCGACCGACACCATAGATAGCGACAGCAAAGAAATGTGCCACTAAACTCAATG
GTCGAGGATTCAGACCAGACAGAAGAGCAATAGGCCCATTTGAAAAGACACCTCCAAGGCTCAA
GTAATCAAAGCAGGCTTGGCGCATCTCATTCCTAGCCTGATCAGGTGAGGCACTGAAAACCTTG
TATAGAGCACCAGCTAATGTGTTTATGGTAGAAGCAACCGGCTGTGAACATGAAAGCGCCATAC
ATTAGACAGCATACATTTTGAAAGGTGGGTGGTAAATTGTGAAATGAAGAGTGAAGACTAACCT
TCCGCAGTGTATAGAATGATTCAAGGTATTTGCAAAGAGCAGATGCATCATGCAGATTGCGGAG
AGGCTTGAGAAGATTACGTAGCACAACAATGTCAGATAATGCAACAGTCATTCCGCCACCAGTC
AAAGGATGCCGCATGTTGAATGCATCACCCATCAAAAGTGCACCAGGGGTTGGATGTGGAGCAG
CCGGCATGCTCCTGTTTGGCATTGTTCTTATGCTTCCCTTATCAATGGCTGCTATGAATGAATC
ATAGATTTCTGGAGGAATCTGTCAACAGAACATTTCCATTGACATTTAGTTGCTATGAGTAGGC
AAGCAAAAACTCGGGACAAGACTGACTGAAATAGCAAAATAATACCTGAGGTGCAACCACTGTT
TTGAGATATTTTGCCATTTCACCGTTTGCTATGGAAGGCACCTTCTGACCAGGGACATCAACCA
AACAGCGAACTTCAGTGCTGCTTATTGGGTAAAATAGGATAGGTGAAGGATTGGCCAGGACAAC
ATGGCCATGGTTTGCATGAGGAAGTTGACAATTCTCCAGGACCAGCCCAACAAAACAAGATGGT
ACATCAACCTAACCACATATTTCCATCAGTATTAGATCTTCTACATGCATGAACAAAAAAGGAT
AGTGCAAAATCTAAAAACTGTACCTTTGGAGAGCAAAGGGCGCGGCGAAGGTTTGAGAAACAGC
CATCGCATACAATTGTCAGAGGTGCATATGCTTTTAATTCTTCACCTGACTTGGTCTTGTATTT
AACACCCTTAACTGTACCATCTTCTTCAACCAATGATGTAACAGTTCCTTGCTCCAATTGAACA
CTGAAATATAAAACATAATGCCAAACATTTACCTCATGTCACATGCAGGTGCACGAATTAGATA
CATCCAGATACGGCGCATGTAGAAGGAAAGAACATGTGAAATACATCATTCTGGACGAGTAGCA
AAATAAGCACTTAAACATAATCTAATATTTTAATCCTCTAGAGGCAACTAAAATACTAATGAAA
TGCTCACATCAAACAATACAAGAAAATCATAAAAATAAGTATGTCAAAAATTCTAGTAAAGATA
AATTTGTGTCGAGAAAGACTATTACTTAGGCAAAGATGCAGCTTTCTGGCGCATCCTCTGTATA
AACCGTCCATTGTGAAAGCTCCTACCAGCAACATCTGAGTGGAACTTCTCCAAGGGATAGGAGA
GTTTTGTGTCTTTCCCATCTTTGAATAACGCGTAACCAAGGACACGCTGAGCATCTATTTCTTG
AACACAATCTGAATATAGTTAAAGATTTAGTCCACTGTACCACTAATACTATAAGAAATATGCG
CGCGCGCGTGCACATACACACATACATAGAGAGATAAGGGGGAAGCTTACCCTCGAGACCCAAC
TCGATCAATTTCAGGTAGCCACCAGGTTGTAACAGTTCACCGACAATTCTATCAGGCTCTGTTA
GGTCTCTCTCTATAACATGCACACGACGGCCATC
Conservation Information
Conserved circRNAs NA
PMCS 0.689538725
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015