Detail information of AT2G04030_circ_g.14


General Information
CircRNA Name AT2G04030_circ_g.14
ID in PlantcircBase ath_circ_012732
Alias 2:1283498-1284496
Organism Arabidpsis thaliana
Position chr2: 1283498-1284496  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.3 AT2G04030_circ_g.4 AT2G04030_circ_g.5 AT2G04030_circ_g.6 AT2G04030_circ_g.7 AT2G04030_circ_g.8 AT2G04030_circ_g.9 AT2G04030_circ_g.10 AT2G04030_circ_g.11 AT2G04030_circ_g.12 AT2G04030_circ_g.13 AT2G04030_circ_g.15 AT2G04030_circ_g.16 AT2G04030_circ_g.17 AT2G04030_circ_g.18 AT2G04030_circ_g.19 AT2G04030_circ_g.20 AT2G04030_circ_g.21 AT2G04030_circ_g.22
Support reads 2/1
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.2:6
AT2G04030.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATCTTTCGTGATAATGTTCAGGTAAGAATCATGAGAAAGAGGCTCATTAGAAAAACCTTTGAC
ATGATACAAGAAATCTCTGAGAGTGAAAACAAAGAGgtcgaagaggacgaaccagttaaggaag
gagaagaggtaaaaaaattatgttgttttaattgtgtgtatcaactatcaaacagtcacaacca
aaagactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGTAAAAAAATTATGTTGTTTTAATTGTG
TGTATCAACTATCAAACAGTCACAACCAAAAGACTGTTCTAGAATTTTGTTTACTGAGTTGATT
TTGTTACTTGTTTGTTTCCAGGGTGAGCCAAAGAAAAAGAAGACCACTAAAACTGAGAAGTATT
GGGATTGGGAACTAGCCAACGAGACCAAACCGCTATGGGTAAGCCTTGGAGCTTTAGCCTGCGT
TTTGTACTTTTCTTTCAACATGTTTACTGATTATTTTGTGTCTTTGAATAGATGCGCAATTCGA
AGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGGCTTTCAATGAGTTCTTGGATCC
ACTTGCTCACACACACTTCACAACTGAGGTCTTTATACTTATACACTATACACTATATTTATGT
CAATTTATGAATTCTTCAATTGGTGCTTACTAGTCTCTGTATTGTCTTGATTATTAAAGGGTGA
GGTTGAGTTCAGGAGCATTTTGTACATCCCTGGGATGGGTCCTCTTAACAATGAAGATGTTACA
AACCCGAAAACAAAGAACATTCGTCTCTACGTGAAGCGTGTGTTTATCTCTGACGATTTTGATG
GAGAGCTTGTGAGTCTTTTATGGGTTCTTTCTTATGTAGAAATCTCTTTAGATTTGTGGTTCAA
TTTTTATCTGACTATGTTACCTAATCTGTTTGCAGTTCCCGAGATATCTGAGCTTTGTGAAGGG
AGTTGTGGACTCTGATGATCTTCCTCTTAATGTTTCTCGTGAAATTCTCCAAGAAAGCAGAATT
GTGAGTGGTGCAACTGTTAGTGATACAAATGTTTATCATATATGAATATCACAAATTGTAACTG
TACTATCTTTCGTGATAATGTTCAGGTAAGAATCATGAGAAAGAGGCTCATTAGAAAAACCTTT
GACATGATACAAGAAATCTCTGAGAGTGAAAACAAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.205564803
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020