Detail information of AT2G04030_circ_g.8


General Information
CircRNA Name AT2G04030_circ_g.8
ID in PlantcircBase ath_circ_012726
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1283496-1283907  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.3 AT2G04030_circ_g.4 AT2G04030_circ_g.5 AT2G04030_circ_g.6 AT2G04030_circ_g.7 AT2G04030_circ_g.9 AT2G04030_circ_g.10 AT2G04030_circ_g.11 AT2G04030_circ_g.12 AT2G04030_circ_g.13 AT2G04030_circ_g.14 AT2G04030_circ_g.15 AT2G04030_circ_g.16 AT2G04030_circ_g.17 AT2G04030_circ_g.18 AT2G04030_circ_g.19 AT2G04030_circ_g.20 AT2G04030_circ_g.21 AT2G04030_circ_g.22
Support reads 2
Tissues leaf
Exon boundary   No-No
Splicing signals   AG-GT
Number of exons covered AT2G04030.1:3
AT2G04030.2:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCAATTCGAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGGCTTTCAATGAGT
TCTTGGATCCACTTGCTCACACACACTTCACAACTGaggtcgaagaggacgaaccagttaagga
aggagaagaggtaaaaaaattatgttgttttaattgtgtgtatcaactatcaaacagtcacaac
caaaagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGTAAAAAAATTATGTTGTTTTAATTG
TGTGTATCAACTATCAAACAGTCACAACCAAAAGACTGTTCTAGAATTTTGTTTACTGAGTTGA
TTTTGTTACTTGTTTGTTTCCAGGGTGAGCCAAAGAAAAAGAAGACCACTAAAACTGAGAAGTA
TTGGGATTGGGAACTAGCCAACGAGACCAAACCGCTATGGGTAAGCCTTGGAGCTTTAGCCTGC
GTTTTGTACTTTTCTTTCAACATGTTTACTGATTATTTTGTGTCTTTGAATAGATGCGCAATTC
GAAGGAAGTGGAAAAAGGAGAGTACAATGAGTTCTACAAAAAGGCTTTCAATGAGTTCTTGGAT
CCACTTGCTCACACACACTTCACAACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.234232038
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017