Detail information of AT2G04030_circ_g.10


General Information
CircRNA Name AT2G04030_circ_g.10
ID in PlantcircBase ath_circ_012728
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1283498-1283727  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder, CIRI-full
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.3 AT2G04030_circ_g.4 AT2G04030_circ_g.5 AT2G04030_circ_g.6 AT2G04030_circ_g.7 AT2G04030_circ_g.8 AT2G04030_circ_g.9 AT2G04030_circ_g.11 AT2G04030_circ_g.12 AT2G04030_circ_g.13 AT2G04030_circ_g.14 AT2G04030_circ_g.15 AT2G04030_circ_g.16 AT2G04030_circ_g.17 AT2G04030_circ_g.18 AT2G04030_circ_g.19 AT2G04030_circ_g.20 AT2G04030_circ_g.21 AT2G04030_circ_g.22
Support reads 5
Tissues leaf, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.1:2
AT2G04030.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTACTTGTTTGTTTCCAGGGTGAGCCAAAGAAAAAGAAGACCACTAAAACTGAGAAGTATTGG
GATTGGGAACTAGCCAACGAGACCAAACCGCTATGGgtcgaagaggacgaaccagttaaggaag
gagaagaggtaaaaaaattatgttgttttaattgtgtgtatcaactatcaaacagtcacaacca
aaagactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 117
Transcript exons: 1283498-1283727
GTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGGTGAGCCAAAGAAAAAGAAGACCACTA
AAACTGAGAAGTATTGGGATTGGGAACTAGCCAACGAGACCAAACCGCTATGG

Genomic sequence GTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAGGTAAAAAAATTATGTTGTTTTAATTGTG
TGTATCAACTATCAAACAGTCACAACCAAAAGACTGTTCTAGAATTTTGTTTACTGAGTTGATT
TTGTTACTTGTTTGTTTCCAGGGTGAGCCAAAGAAAAAGAAGACCACTAAAACTGAGAAGTATT
GGGATTGGGAACTAGCCAACGAGACCAAACCGCTATGG
Conservation Information
Conserved circRNAs NA
PMCS 0.256226307
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017