Detail information of AT2G04030_circ_g.9


General Information
CircRNA Name AT2G04030_circ_g.9
ID in PlantcircBase ath_circ_012727
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1283498-1283533  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G04030
Parent gene annotation HSP90.5
Parent gene strand +
Alternative splicing AT2G04030_circ_g.3 AT2G04030_circ_g.4 AT2G04030_circ_g.5 AT2G04030_circ_g.6 AT2G04030_circ_g.7 AT2G04030_circ_g.8 AT2G04030_circ_g.10 AT2G04030_circ_g.11 AT2G04030_circ_g.12 AT2G04030_circ_g.13 AT2G04030_circ_g.14 AT2G04030_circ_g.15 AT2G04030_circ_g.16 AT2G04030_circ_g.17 AT2G04030_circ_g.18 AT2G04030_circ_g.19 AT2G04030_circ_g.20 AT2G04030_circ_g.21 AT2G04030_circ_g.22
Support reads 2
Tissues leaf, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04030.2:1
AT2G04030.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTAAGGAAGGAGAAGAGgtcgaagaggacgaacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGAAGAGGACGAACCAGTTAAGGAAGGAGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017