Detail information of BGIOSGA035250_circ_g.3


General Information
CircRNA Name BGIOSGA035250_circ_g.3
ID in PlantcircBase osi_circ_003144
Alias 11:12794187|12795531
Organism Oryza sativa ssp. indica
Position chr11: 12794187-12795531  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035250_circ_g.1 BGIOSGA035250_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035250-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACAAGAAGAGCTCAGAACGCCAGATATATGAGTTGTATGCTGTGAGCAATCATTATGGC
AGCATGGCAAGTGGACATTATACAGCATACATAAAGggacaacggaaacaatatcagtgtaaca
gcttggaagccctacggtgttcctcttctggcacaagtatctcgtaatgaagctgtcacgggta
tgcatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACAACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTCTGGCACAA
GTATCTCGTAATGAAGCTGTCACGGGTATGCATATCCATGAGATGGTCCGTAAAATGCTTGCAC
CTATGCAGAAGAATCAGGAATCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGGACACAGAC
TTATCATACTGACAGCACCAAATTTCAGCTACAGTTGATTGACGATAGCAACACAACTATTGAG
CAATCCAATGATACTATTAGAGTTCCACAGTCTTCTCTTGCAGCTGTAATCTTTGTCAATTGGT
CTAAAGCAGATCTGAAAAAGTTAAACACTCATCATTTGGAGAACCTTCCGGAGGTGTTCAAGTA
TGCTCCTCCTGCCAAGAGAACCCGTGGTGAACCTCTCTCGCTTTATTCATGCTTGGATGCTTTC
TTGAGAGAAGAACCTCTTGTTCCTGAAGACATGTGGTTAGTTTCCTTTCTAATTTTTCGAAAGA
GTGATGTGGTCAATTTTCAATTACTTGTTCCAAGACACATTAGAAATACCATTTACTTCAGTTA
TACTTGGTACTAGCTGATATTCAAGGCCTGTTTGGCACAGCTCCAGCATCAGCTCCACCTCTCC
TAGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCTAAAAGCTCCACAACTCCACTCCAGAT
CCAACTCCTGGAGCTAATTTAGGAGTTGGAGCTCTACCAAACTGGCCCTCAGTGACATCCAGCA
TTTGGGTTTTGTTAGTATGATAGTCACATTGCCAAAATTTGCATTTCAGCTGTTTGTATATACA
CTCGTTTACTGTAGTATATGGTATTGGCACATATACCTTATTAATTGCCCAGGGGTGTTTAAGT
CTAATTTCTACCCAGTTGAAAGTGTAGGACGTTTTTTTTTTGTTTTTGTTTTTTTTTTTGCGTC
TATTGTTCCATGTCTTGTGCTCTTGTAAAAGTTAAGATGATAAGTTTTCCTGCCTGATGTCTCT
TGTTTTCACTTCAAACAGTGTGAGTAACAATCCTATTATTGAATTAGGTACTGTCCGAGGTGCA
AGGAGCAAAGGCAAGCCAGCAAAAAGCTTGACTTATGGAGACTTCCAGAAGTGCTAGTTATACA
TTTGAAGAGATTCTCCTTTAGTAGGTCAACAAAGCAGAAGCTTGAAACATTTGTCAACTTCCCA
ATACATGATTTTGATTTGACAAACTATATTGCCAACAAGAAGAGCTCAGAACGCCAGATATATG
AGTTGTATGCTGTGAGCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCATACATAAA
G
Conservation Information
Conserved circRNAs osa_circ_009336*
PMCS
Functional Information
Coding potential Y
Potential coding position 12794387-12795394(-)
12794279-12794258(+)
Potential amino acid sequence MISLCPCGNRALNRMLGFLILLHRCKHFTDHLMDMHTRDSFITRYLCQKRNTVGLPSCYTDIVS
VVPLCMLYNVHLPCCHNDCSQHTTHISGVLSSSCWQYSLSNQNHVLGS*(-)
MHIHEMVRKMLAPMQKNQESQHSVQSSVSTRTQTYHTDSTKFQLQLIDDSNTTIEQSNDTIRVP
QSSLAAVIFVNWSKADLKKLNTHHLENLPEVFKYAPPAKRTRGEPLSLYSCLDAFLREEPLVPE
DMWYCPRCKEQRQASKKLDLWRLPEVLVIHLKRFSFSRSTKQKLETFVNFPIHDFDLTNYIANK
KSSERQIYELYAVSNHYGSMASGHYTAYIKGQRKQYQCNSLEALRCSSSGTSIS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021