Detail information of BGIOSGA035250_circ_g.1


General Information
CircRNA Name BGIOSGA035250_circ_g.1
ID in PlantcircBase osi_circ_003143
Alias 11:12790979|12795531
Organism Oryza sativa ssp. indica
Position chr11: 12790979-12795531  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035250_circ_g.2 BGIOSGA035250_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035250-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACAAGAAGAGCTCAGAACGCCAGATATATGAGTTGTATGCTGTGAGCAATCATTATGGC
AGCATGGCAAGTGGACATTATACAGCATACATAAAGgtatggtggaggaccaacattgccaaga
aaggcaatcaatactggcttgtctcaaactgatttagccatagaagtttatcctttacgtctgc
agttactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATGGTGGAGGACCAACATTGCCAAGAAAGGCAATCAATACTGGCTTGTCTCAAACTGATTTA
GCCATAGAAGTTTATCCTTTACGTCTGCAGTTACTTCTGGCTCCAAAAGGAGAGCAAGCTGTTA
TAAGGATAAGCAAAAAAGTATGTATCTATTTCCCTGGCTAGGGTTGAACATGTGACAGTCATTT
GTTTTGTCATTCCATCAATTGATTTAAATTGAATAATAATGTAATGTATGAAAGTACAGATCCT
CTGGAGGAAAAAATGATGTAGAACTCTTTTAATGGCAAAAAGTAATAACTGTGTAAAATTTCAC
TACATTTTTTAGCAGACAAGAACCAACAATTTATTGATTCGTGCAGGATACAGTTGGCGAACTC
CATAAGAAGGCTTGTGAGGTTTTTGATTTGATACCTGATGAGGTAGATATTTTATTAGGGTGTT
TACAGTATTATGTTTCCCCCCTCTAAATTTGAAGTTTTCATGGTCATGTTATTATTGGCAGGTC
TGCATTTGGGACTACTATGGCCGAACAAGACATTCTTTGATGGATAACTTGGAGAAAACCCTTG
ATGATGCCAACATTCAAATGGATCAAGATGTGAGTACTGGAATTTACGTAATAATTTCCATTGA
CAAGTTATGTTTTCTGTTCCTTGACTGGTGTTTTCCCTCTTGGCCATAATACACTATGTTTTTT
AGTTTAGTTTCTCCAAATATTCTCCAGAATGTTTCCATATTAAATGATTTAACTCGAACTATTT
GTTTTGTTATTGACAGATTCTAGTGGAGGTTACTACCGATGCAAATGGTAGTTTGGATGGTGGT
TGCATTGGTTCAATCCAAGAAAATGAATATTTAGAACGAGAATCAACTTCCTTGATTGCAGATG
CTTCGAAATCAGGATTATCAAATGAGAATTTTGCATCAAACAATTATACTTCCAGAAGCTACAG
CTCTAGTCTTACACAAAGCCAGTACCTGCGATCTTCGAATGGGGACTTAGATAACATGCATGGT
ACTAGTGCCATGATCACCAGAGGATCTCCTTTAGGTCTTACAGGGCTACTCAACTTGGGAAATA
CATGTTTCATGAATAGTGCTATACAATGCCTTGTGCACACACCAGAATTCGCTAGATATTTTCG
TGAAGATTACCACCGTGAAATAAATTGGCAAAATCCCCTGGGTATGGTGGTAAGTACTCTTTCT
ACTAGCATGGCGTTGAAGCCTTACGTTTGAACTTAAAGTGTTACAGAGATAGTGATATTATTTT
GTAGCATGGCGTTGAAGCCTTACGTTTGAACTTAAAGTGTTACAGAGATAGTGATATTATTTTG
TTACATGCATTTGGTTTGATGCCAGTCGAATTTGCTGATTTTAGATTTCTACATAGTATGCAAC
AACCGAGAGATTTTTGATACTTGGTGAAATTAGTGAAATTGACAATTTTGTTTGTTTTGATTCA
GTAACAATTCCCTTTTTTTTGACGGGAAAGTAACAATTCCCTTGGATATATACTTTTTTTGGGT
TGTGCATTCTGTTATGCTACCTGCGTTCAAATTTCTACTTTTTTTCGTTGTATAAGTGACTTAT
CAAGTTTATTTGATGCTTCTGTTCTTTTTTATGTCAGCCTTTGTCAGTTCATATGGTTGTGCTT
GAAATCAATTTTCTGATTTCTTCTTTTGACCAAAAAATTTCTAATTTCTTACAGCAAAGATAAT
CTCAGATGCGTGATTCCCTTGTCATATTAAGATAACGGATACAAGCTACAGTTATTAGAAATAA
TTATTTTTTGGAACATTTTTTGTGCACTGATTTGGTGCGTGTGTATCATGAAAGCAAAAAAAAA
AAAAAGAAAAAGAAAACATGGCTACTGCATGGTTAGGTTTCATGTTCATTTGCATGCGTACCTC
ATGTTAATTGTACTGAGTTCTGATGGTAGTCTTGTAGGGTGAACTTGCATTAGCCTTTGGTGAG
CTACTGAGAAAACTGTGGGCTCCTGGACGTACACCAGTTTCTCCTCGGCCATTCAAAACAAAGC
TGTCTCGCTTTGCACCTCAGTTCAGTGGATACAACCAACATGATTCACAGGTTCGATCCTCTCC
ATGAACAACTATTCTATTTTGTCTTCAGATATTCTTTTATATTTATCTTGGCAAAATCTTGCAG
GAGTTGTTGGCATTCCTCTTGGATGGACTTCATGAAGACTTGAACCGTGTGAAACATAGGCCTT
ACATAAAGTCCAAAGACGCTGATGGTCGATCAGATGATGAGGTCGCAGATGAATATTGGGCCAA
TCATATTGCCAGAAACAATTCAATCATTGTTGATGTATGCCAGGTTAGATTTTGTGCTCTCAAG
CAGACATCATTTTGAAATTCTAGCAATAGCAGTGATGACAGTATGCAAGATAAAATGGGTCCAG
TGTCTGGCTCTCTGTTACCAATTGTGGCGTAATTTTTTCTCCCTTGTTGCTTGCGAAAGTTGTT
TTGTAACCTACCTTGTATTGTGATTTTCCAGGGACAGTACAAGTCAACTTTGGTATGCCCAGCC
TGTGGAAAGGTTTCAGTGACTTTTGACCCATTCATGTATCTTTCCTTGCCTCTACAATTTACAT
CAACCCGGAGCATGACCGTTATGGTCTTTACTTTTGATGGGAGTACTCCACCAACACCATACAC
TGTAAATGTACCCAAGCAAGGAAGGTGCAGAGATCTTATCCAAGCCATCAGCAATGCATGCTCA
CTTAGAAATGGGGAGAGACTTGTAATTGCCGAGGTTTGTCATAAAAGGCCAACTGAATTAAGTG
CTATATGCTTGTGGGTTTTATGAAACAATTGAGTTATTATTTTCCTTTTTTCCTACAGATACGT
AATCATAGGATCCATCGTCTACTTGATGATCCAGTGGTTCAACTATCAACAATTAATGATGATG
ATCACTTGGCAGTTTATAGGCTTCCAAAAATGGAAAAAAAGCCAAATTACATTCAGTTTGTTCA
TCGCCGTGATGATTGGTAAGCAAATAATAAAACTCTAGTTACAATTATGTTCATGCTAGTATGA
TAGATGTAGCTTACTTGCATGTTTTTTATATATAAACAAGCCTAGCATATGTGATCCCTTATAC
TTTACATGGAATAGTTGGAAAATAATACTTGTGATCGAATTTTTCTTATGATGTTAGCTTCACT
ACTTACAGGGACAACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTC
TGGCACAAGTATCTCGTAATGAAGCTGTCACGGGTATGCATATCCATGAGATGGTCCGTAAAAT
GCTTGCACCTATGCAGAAGAATCAGGAATCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGG
ACACAGACTTATCATACTGACAGCACCAAATTTCAGCTACAGTTGATTGACGATAGCAACACAA
CTATTGAGCAATCCAATGATACTATTAGAGTTCCACAGTCTTCTCTTGCAGCTGTAATCTTTGT
CAATTGGTCTAAAGCAGATCTGAAAAAGTTAAACACTCATCATTTGGAGAACCTTCCGGAGGTG
TTCAAGTATGCTCCTCCTGCCAAGAGAACCCGTGGTGAACCTCTCTCGCTTTATTCATGCTTGG
ATGCTTTCTTGAGAGAAGAACCTCTTGTTCCTGAAGACATGTGGTTAGTTTCCTTTCTAATTTT
TCGAAAGAGTGATGTGGTCAATTTTCAATTACTTGTTCCAAGACACATTAGAAATACCATTTAC
TTCAGTTATACTTGGTACTAGCTGATATTCAAGGCCTGTTTGGCACAGCTCCAGCATCAGCTCC
ACCTCTCCTAGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCTAAAAGCTCCACAACTCCA
CTCCAGATCCAACTCCTGGAGCTAATTTAGGAGTTGGAGCTCTACCAAACTGGCCCTCAGTGAC
ATCCAGCATTTGGGTTTTGTTAGTATGATAGTCACATTGCCAAAATTTGCATTTCAGCTGTTTG
TATATACACTCGTTTACTGTAGTATATGGTATTGGCACATATACCTTATTAATTGCCCAGGGGT
GTTTAAGTCTAATTTCTACCCAGTTGAAAGTGTAGGACGTTTTTTTTTTGTTTTTGTTTTTTTT
TTTGCGTCTATTGTTCCATGTCTTGTGCTCTTGTAAAAGTTAAGATGATAAGTTTTCCTGCCTG
ATGTCTCTTGTTTTCACTTCAAACAGTGTGAGTAACAATCCTATTATTGAATTAGGTACTGTCC
GAGGTGCAAGGAGCAAAGGCAAGCCAGCAAAAAGCTTGACTTATGGAGACTTCCAGAAGTGCTA
GTTATACATTTGAAGAGATTCTCCTTTAGTAGGTCAACAAAGCAGAAGCTTGAAACATTTGTCA
ACTTCCCAATACATGATTTTGATTTGACAAACTATATTGCCAACAAGAAGAGCTCAGAACGCCA
GATATATGAGTTGTATGCTGTGAGCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCA
TACATAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 12791531-12791035(+)
Potential amino acid sequence MDNLEKTLDDANIQMDQDILVEVTTDANGSLDGGCIGSIQENEYLERESTSLIADASKSGLSNE
NFASNNYTSRSYSSSLTQSQYLRSSNGDLDNMHGTSAMITRGSPLGLTGLLNLGNTCFMNSAIQ
CLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPVSPRPFKTKLSRFA
PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHRPYIKSKDADGRSDDEVADEYWANHIARNNSII
VDVCQGQYKSTLVCPACGKVSVTFDPFMYLSLPLQFTSTRSMTVMVFTFDGSTPPTPYTVNVPK
QGRCRDLIQAISNACSLRNGERLVIAEIRNHRIHRLLDDPVVQLSTINDDDHLAVYRLPKMEKK
PNYIQFVHRRDDWDNGNNISVTAWKPYGVPLLAQVSRNEAVTGMHIHEMVRKMLAPMQKNQESQ
HSVQSSVSTRTQTYHTDSTKFQLQLIDDSNTTIEQSNDTIRVPQSSLAAVIFVNWSKADLKKLN
THHLENLPEVFKYAPPAKRTRGEPLSLYSCLDAFLREEPLVPEDMWYCPRCKEQRQASKKLDLW
RLPEVLVIHLKRFSFSRSTKQKLETFVNFPIHDFDLTNYIANKKSSERQIYELYAVSNHYGSMA
SGHYTAYIKVWWRTNIAKKGNQYWLVSN*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021