Detail information of Os11g0473275_circ_igg.1


General Information
CircRNA Name Os11g0473275_circ_igg.1
ID in PlantcircBase osa_circ_009336
Alias NA
Organism Oryza sativa
Position chr11: 16322691-16324036  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os11g0473275_circ_g.1 Os11g0473275_circ_g.2
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACAAGAAGAGCTCAGAACGCCAGATATATGAGTTGTATGCTGTGAGCAATCATTATGGC
AGCATGGCAAGTGGACATTATACAGCATACATAAAGggacaacggaaacaatatcagtgtaaca
gcttggaagccctacggtgttcctcttctggcacaagtatctcgtaatgaaactgtcacgggta
tgcatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACAACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTCTGGCACAA
GTATCTCGTAATGAAACTGTCACGGGTATGCATATCCATGAGATGGTCCGTAAAATGCTTGCAC
CTATGCAGAAGAATCAGGAATCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGGACACAGAC
TTATCATACTGACAGCACCAAATTTCAGCTACAGTTGATTGACGATAGCAACACAACTATTGAG
CAATCCAATGATACTATTAGAGTTCCACAGTCTTCTCTTGCAGCTGTAATCTTTGTCAATTGGT
CTAAAGCAGATCTGAAAAAGTTAAACACTCATCATTTGGAGAACCTTCCGGAGGTGTTCAAGTA
TGCTCCTCCTGCCAAGAGAACCCGTGGTGAACCTCTCTCGCTTTATTCATGCTTGGATGCTTTC
TTGAGAGAAGAACCTCTTGTTCCTGAAGACATGTGGTTAGTTTCCTTTCTAATTTTTCGAAAGA
GTGATGTGGTCAATTTTCAATTACTTGTTCCAAGACACATTAGAAATACCATTTACTTCAGTTA
TAATTGGTTCTAGCTGATATTCAAGGCCTGTTTGGCACAGCTCCAGCATCAGCTCCACCTCTCC
TAGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCTAAAAGCTCCACAACTCCACTCCAGAT
CCAACTCCTGGAGCTAATTTAGGAGTTGGAGCTCTACCAAACTGGCCCTCAGTGACATCCAGCA
TTTGGGTTTTGTTAGTATGATAGTCACATTGCCAAAATTTGCATTTCAGCTGTTTGTATATACA
CTCGTTTACTGTAGTATATGGTATTGGCACATATACCTCATTAATTGCCCAGGGGTGTTTAAGT
CTAATTTCTACCCAGTTGAAAGTGTAGGACGTTTTTTTTTTTGTTTTTGTTTTTTTTTTTGCGT
CTATTGTTCCATGTCTTTTGCTCTTGTAAAAGTTAAGATGATAAGTTTTCCTGCCTGATGTCTC
TTGTTTTCACTTCAAACAGTGTGAGTAACAATCCTATTATTGAATTAGGTACTGTCCGAGGTGC
AAGGAGCAAAGGCAAGCCAGCAAAAAGCTTGACTTATGGAGACTTCCAGAAGTGCTAGTTATAC
ATTTGAAGAGATTCTCCTTTAGTAGGTCAACAAAGCAGAAGCTTGAAACATTTGTCAACTTCCC
AATACATGATTTTGATTTGACAAACTATATTGCCAACAAGAAGAGCTCAGAACGCCAGATATAT
GAGTTGTATGCTGTGAGCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCATACATAA
AG
Conservation Information
Conserved circRNAs osi_circ_003144* osi_circ_009006
PMCS 0.289689227
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017