Detail information of BGIOSGA035250_circ_g.2


General Information
CircRNA Name BGIOSGA035250_circ_g.2
ID in PlantcircBase osi_circ_009006
Alias Chr11:18104420_18105765(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 12794186-12795531  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA035250
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035250_circ_g.1 BGIOSGA035250_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035250-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCCAACAAGAAGAGCTCAGAACGCCAGATATATGAGTTGTATGCTGTGAGCAATCATTATGGC
AGCATGGCAAGTGGACATTATACAGCATACATAAAGgggacaacggaaacaatatcagtgtaac
agcttggaagccctacggtgttcctcttctggcacaagtatctcgtaatgaagctgtcacgggt
atgcatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGACAACGGAAACAATATCAGTGTAACAGCTTGGAAGCCCTACGGTGTTCCTCTTCTGGCACA
AGTATCTCGTAATGAAGCTGTCACGGGTATGCATATCCATGAGATGGTCCGTAAAATGCTTGCA
CCTATGCAGAAGAATCAGGAATCCCAACATTCGGTTCAAAGCTCTGTTTCCACAAGGACACAGA
CTTATCATACTGACAGCACCAAATTTCAGCTACAGTTGATTGACGATAGCAACACAACTATTGA
GCAATCCAATGATACTATTAGAGTTCCACAGTCTTCTCTTGCAGCTGTAATCTTTGTCAATTGG
TCTAAAGCAGATCTGAAAAAGTTAAACACTCATCATTTGGAGAACCTTCCGGAGGTGTTCAAGT
ATGCTCCTCCTGCCAAGAGAACCCGTGGTGAACCTCTCTCGCTTTATTCATGCTTGGATGCTTT
CTTGAGAGAAGAACCTCTTGTTCCTGAAGACATGTGGTTAGTTTCCTTTCTAATTTTTCGAAAG
AGTGATGTGGTCAATTTTCAATTACTTGTTCCAAGACACATTAGAAATACCATTTACTTCAGTT
ATACTTGGTACTAGCTGATATTCAAGGCCTGTTTGGCACAGCTCCAGCATCAGCTCCACCTCTC
CTAGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCTAAAAGCTCCACAACTCCACTCCAGA
TCCAACTCCTGGAGCTAATTTAGGAGTTGGAGCTCTACCAAACTGGCCCTCAGTGACATCCAGC
ATTTGGGTTTTGTTAGTATGATAGTCACATTGCCAAAATTTGCATTTCAGCTGTTTGTATATAC
ACTCGTTTACTGTAGTATATGGTATTGGCACATATACCTTATTAATTGCCCAGGGGTGTTTAAG
TCTAATTTCTACCCAGTTGAAAGTGTAGGACGTTTTTTTTTTGTTTTTGTTTTTTTTTTTGCGT
CTATTGTTCCATGTCTTGTGCTCTTGTAAAAGTTAAGATGATAAGTTTTCCTGCCTGATGTCTC
TTGTTTTCACTTCAAACAGTGTGAGTAACAATCCTATTATTGAATTAGGTACTGTCCGAGGTGC
AAGGAGCAAAGGCAAGCCAGCAAAAAGCTTGACTTATGGAGACTTCCAGAAGTGCTAGTTATAC
ATTTGAAGAGATTCTCCTTTAGTAGGTCAACAAAGCAGAAGCTTGAAACATTTGTCAACTTCCC
AATACATGATTTTGATTTGACAAACTATATTGCCAACAAGAAGAGCTCAGAACGCCAGATATAT
GAGTTGTATGCTGTGAGCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCATACATAA
AG
Conservation Information
Conserved circRNAs osa_circ_009336
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021