Detail information of 1_circ_ag.4


General Information
CircRNA Name 1_circ_ag.4
ID in PlantcircBase ath_circ_003605
Alias NA
Organism Arabidpsis thaliana
Position chr1: 7131878-7135664  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 1_circ_ag.17 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.2 1_circ_ag.3 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 1_circ_ag.14 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23 1_circ_ag.24
Support reads 11
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCTTGTCAGATTGGGCAGCTTTGAGAAATCGTTTCATGAAAACATATGGAGTTGGTAGAGA
GAAATTGAATTGCAAGGTGTTGGCCATTAGCTTCTCcatatctagcacttctcttctagagtaa
gctttgtcagagatcaagatgagatcatctaccactggaactgaaacttcttcatatttacatg
cgagcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATCTAGCACTTCTCTTCTAGAGTAAGCTTTGTCAGAGATCAAGATGAGATCATCTACCACT
GGAACTGAAACTTCTTCATATTTACATGCGAGCAACAAAGCAGTAACACCAACAAGCTGAAGCT
TTTTCCTCACGATTTGATGAACCGCAAGGAATCTGTCGATGACAAAAATCTTCTTAGTTTTTCC
CTAAAGACAAGAATGAACAAACATAACTTGTATTGAGATAACAAGAACTCAAGTTACATAAGAA
GTCGTTCAAGTAGAGCATATACATGTATGATATAGAAATTTATACGACATGGTATCAAGAAACA
GAGCTTTTTATTATAAAAAATTCATCATCAGCTATTAGAGAGGTCTCTAGTCTATATCTCTCAT
TGACGTTTTTGAAAAACAGAGCAGTATTTTTACAGAGTTAAAATAATTATTTTGTCGATTAAAA
AAGTTAAATGTGTTTTTATTAATTACAACTAGATGAACACCCATGCGTAGCATCGGTTTTTGTT
TTTTGAATTGTCGGAAAAATATGATTATGGTTTTTTTTTTATTTTGATGTTCAATATAATTATT
ACTATAATTCATATCTATTTAATATAATTATTAATTTTTATGATTAGTTTCATCTATAACTCGA
AATATCAATTCTACTATAATATGAAAATTTATATATCTATTTTTCTAATATTTAACTATCATAA
TCACATACAACAACAATATATGATAGATTGATAAAATGAATGTAGTTATATTACTTATGTGTTT
TGAAACTTGTCTAACTTAATTATAACAAACAATTTTTTATTCCATATATTTTTTTGTCATCTAG
TAAACAATCACATCATGATATGCTAGTAATTTAAGTCAACACTTTAATTATTTTCTTTTGCATA
TAACAATATAATGTCTTATGTTTTTTTTGGTATGTCTAATGTGTCAGATGACTATTACGTGAAA
AAAATTGTTTATCAATATTACCAAGTTATCAGAACGCACAAAAATATACAGAAAGAAGGTCATA
TGATAAAATCATATTCACAAAACGTAATAATAAAAAAATATCTAACTAAAATTACTAAACTAAT
ATGAGGTGGCCAACTTTCATATATATGATTTAAATGGAAAATCAAAGTATAAAAGGAAATTGAT
TTGCTAGAAAGAAGGAAAAAAACAAACCCTATAGATAGGTTCTTCAGCAAGGTAAGATAGAGAG
AACGTGAGAGATCGATCATGGCGAATTCAACAGGTAAACCGACAAGTTCAACACAAGAAGATGA
AGAAGTTACATACATATTAGCACAATTGATGCAAGATGTTATGGATCGTGAAGAGGATATAGAT
GATGAAGACGATATAGATGATGAGGTTGCGTCCCTTCCATTATTACTAGTAAGCCAAGCTAATC
AAAAGCAGTCTAGGAAGAGGGAAGAAAAAACTGAAAAAAATCAACCTAAGAGGGTTAAGAATCA
GAACATCATGAAAATAAATATCCATGACTTTTCAGAAGAAACTCTGAGGTTAATTGAGGATTGG
TACAACGCTGAACTCGATCCACAGGATATATTCGGCGATGATGAGGTGACGAGGCGATTCAGCC
GACCGATAAAGAAGCAGTTGATGTCGAGCGACGTCGATACAGATCAAAGCAGGCTCATGTTATC
GAAGGAGCAAGTGAAGGAGAAGATGCTTCCTTTTCTAGAAGAATCAGAGGATCCGGTAAAGGGG
GTTGATGTTTCGGTGTATGGACCAGACGGGGAAGTTCAACAGATGAAGTTCAAGATGTGGAATG
GGGATAAAACACCTGTCTTAACTTCAGGGTGGATGCAGTTTGTGGCAGATTATGGTCTTTTGAA
GACTTCTGATTTTGTCACTGTTTGGATGTTTAGGCACATAAAGACTCGAAAGCTTTGCTTTGCT
ATTCACTACGTTACATTTTCTTTAAGAAATTAACTAATCGAGTGGGATGATCTTGAAGACTACT
GCTTTCTTGAATCCAAATTAGGGTGAGATCTTCAAGAATTAATACAGTGGTCAAATGTGAATAG
TCTCAAGTATGCAGGTCTTAAAGCTTCGTCTTCTTTGCGAATAATGTGCTGTATGGGTTTTGAA
TGAACCTGTAATTATTGGGAAAGAACTACCTGTAGTTTTTTAGTTCAGAAAGTCTTTAACTCTT
TTAATGTGTTATTGTTCATAAGTATTCATAAATAATCTGTCAACTTAATGGGTTTGTTTATTAA
TAATTGTCACTTAACTTTTGTTTTCGGTTTTTCATTGCTATGTTACAGGATGGTAAGGTATCAC
AGCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGGTGCTGCAACACTTCTTAGAGAACACT
GTAAAACCAAACAAAGGAGAACAAGAGAGATATGTCCAGATGCACTACTAGTTCTGTATTTTGG
GTTACCAAGATGTTTGAATCATTGACAAGTTTTCGTTGTGATCTATTTTCTTCTTTGCGCATTC
TCCATTTCTGACAGTAGATGAGTAAAACAAAGTACATTGTTTTCATAAAGGTCTTAATAAGACT
AAGATCAGAAAACAAAGATAAATTGAAGGAACAAGATTATGAAATACTAGAAGTAATGATTATA
TCCTCCTTCAATAAAGACTGCAATACTGTAGACTTTGAGTTGTCTAAATAACGTAGTCTATATG
GTCATTTATAACATTAATATATAAGCTATAAAAGAATATTGTACTTGTATTTTCATCATGTAAA
AACCTTGTCAACTGCAATTTTCCCAAATTACAATCCAAAAAATTGCCATGTACTTGTAGAATAT
TTGATAGGGTCTAGAGATTCAGTTCCAGAGTACCAAAACGACATGTAGAAGAATATTTGATTCA
GTCTAGAGGTTCAGCTCCCGAGTAATATTAACCAAACTGGATCATAGATTTTCCTGAGTCTATA
CAAGAATCGATTCACAAGTTGAATATAGGAAAGCATGATATCAGAAGATTCTTTTTATTCTCTC
TCAAGTGAAGAAAGATCTAAAGACCTTAGAAAGAGAAGAATACACTCTTTTTGGGCTACTTGCC
ATGATATCTAAAGATCCATTCTTCTCCCATTTTGGGCAACTTGCTCTACTATCTCTCTTTCTCT
CACACTCTTTTTGTTCTAAAGAAAAACTCGAGTTAAGTCATATTAGATTCTTATTAATATTAAA
TCAGAAACCCAGCTGGTTCAGTTCTTGCAGCATGACAGAACTTAGATGTGTTGTACTTTCTGTG
AACTCCTGTGAGCTTCCCTGTTCCTGCCTTGTGATGGAAAGCAACCATCTTTCTCGCACATGCC
CTAGAAAAAACACAAAAACCCACTGTCAGGATACCAAAATCTCATGTCATGGGGTTTTCAAAAA
AATCAATGTATGTTCTTACAGTAGCTGTTTTTCGTTGTAGCCTGTGTGAAACTCACAGGTTTTG
CTCCATTCTTCAAATCCCTTAAGTGTACACTGAGCAGTGTAGATTGCTGAGGCCGCCAGCTTAG
ATGGAAGATACTCTAGCATCTCATACTCCACAAGGCAAAGCTCGATCATAAAGAATGATAAAAT
CTCAAGCTGAAACCACAATTGCATATACCACACCGATTTAGATATTAGGCCTGATGGTTTCCGG
ATATAATGATTCAAGCTTTTTTAGTTAGGGAGATATATACCTTCTTGTCAGATTGGGCAGCTTT
GAGAAATCGTTTCATGAAAACATATGGAGTTGGTAGAGAGAAATTGAATTGCAAGGTGTTGGCC
ATTAGCTTCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.591179579
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017