Detail information of 1_circ_ag.17


General Information
CircRNA Name 1_circ_ag.17
ID in PlantcircBase ath_circ_003578
Alias At_ciR276
Organism Arabidpsis thaliana
Position chr1: 7085326-7088687  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 1_circ_ag.14 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23 1_circ_ag.24
Support reads 14/341
Tissues leaf/root, aerial, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTCTCTTCTTCCACTGTTTTCACATGATCTCCTTCAACAATCTTCTTCTTTTTCTCCTTCTT
CTTCTTCTCACCGTCTTCACCTTCTTCATCACTCGAagaggaagaagagctgttggatcggtga
agcttttcgatgacactaggcttgttctcctcatcttcctcggtcttttcttgaagctcctcta
gcagagta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 588
Transcript exons: 7085326-7085554,7088298-7088430,7088462-7088687
AGAGGAAGAAGAGCTGTTGGATCGGTGAAGCTTTTCGATGACACTAGGCTTGTTCTCCTCATCT
TCCTCGGTCTTTTCTTGAAGCTCCTCTAGCAGAGTAATCTTGTTCTCCTTCACTTCCTCGTGCT
CCGCAGCTAACTCCGGTTCAGAGATCTGAGCCTTATGATCGAACTCAGACTCGAGCGTCGTTGT
CTCTTGAGGTTTCACTTCCTCTTCCTTCTTCCCCAAGCTTCTCTTTGATCTTGTCCATAAATCC
CTTCTTCTCCTCCGGGATGTCAGCAATCGGTGTTGCTGTTTCAACCAGCGGTGTGGTGTTGACG
ACTTGTGAATCCTCTGGTTTCTTGCTGTGGCCTGGAAGCTTCCTTCTTCCTCTGGTTTGTGATC
CTCTACCGAATGTGGTGCTGGCATGGTGGTGACGACTGGTACATCATCACCCCCTGGTTTCTCT
CCGAGTGGAAACTTCTCCTTAATCCTGTCCATTACTCCTTGATTCTCTTCTTCCACTGTTTTCA
CATGATCTCCTTCAACAATCTTCTTCTTTTTCTCCTTCTTCTTCTTCTCACCGTCTTCACCTTC
TTCATCACTCGA

Genomic sequence AGAGGAAGAAGAGCTGTTGGATCGGTGAAGCTTTTCGATGACACTAGGCTTGTTCTCCTCATCT
TCCTCGGTCTTTTCTTGAAGCTCCTCTAGCAGAGTAATCTTGTTCTCCTTCACTTCCTCGTGCT
CCGCAGCTAACTCCGGTTCAGAGATCTGAGCCTTATGATCGAACTCAGACTCGAGCGTCGTTGT
CTCTTGAGGTTTCACTTCCTCTTCCTTCTTCCCCAAGAAATCAAACAATCCACGATCCGTAACC
TCTGTTGTCGTCGCTGGTGATTCCTCTGTTGCGACCGTTGGTGTCTCGTGCTCGGGAACGTTGT
TCTTGTACTCCTCAGCCATAGTTAATCTTGATTTGATTAAAAGTTTATATAGTAAATAGAAAAT
ATGAGAAAATTTCAAGACTTGTGTAGTTGCTTTAAGATGGTTTTGTGAATGAGTAATGTTTGTG
ATGAGATAAGAGAGAGTGGGGTTTTTATAGTGTCAAGAGAAGGGTCCAGGCCAACGCGGAGGTA
ACGCTGTAAAGATTTAATTATTTTTAAAATGATCCAAAAAGATGGATATTTATTTCTTGAATTG
TATAATGACCCCTCTTATTTCTTGAAGTCGGTAGATGAATATCATGATATCAGTATCACCACTT
TTTTCTTAATTTAAACGATATATGTTTTTAATATATAGATGAAGAGTTAAACTAATATTAGATA
ATCGCATAGTCATGTACTTTTATCAACAGAAGCTGTATCGAACTATGGTCTATGGTTTTGTTTT
GGATTAATCAATGGTCTATGGTTACGTGGTTGAAGTACATCCTTTTAATCTATTATTGTATTGC
ATTTTATCAGATTTAAAAGGATAACAGATGTATAATTTAAAGAGTTTCAATGGACTTGGCATAT
ATGTTATGTAGTTGTTTGGAATTTGAATTTGATGTTGTGTCACCATCCTATTATTTCAAACTTT
TTGTAACAAAAAACAACAAAACACTACATAATTTGCCCGGAAATAGAAGTTAACAATTTTTTAA
AACCTTTTTCTTGATTTTTATTTTAAATCGTTTTGACATTTTACTTCACTTACTTGTTGAAAAA
TATTATATAAAAAGCATATGAAAGAAATTTCAAACTTCAAAAGTGATGTTTCCAACTCTTTTAA
GACTTTCAGGTTGTATCTGTAAAATATACTATAAATAAAGGGGCAAATTAAAAGGGAAGAATTA
TAACCGAACTATTAAGTATTAACAGAATTATCTAGCCAAAGGATCAGTACTAAATGGAAAGACT
AATTATACAATAGAAGTTAGGACGAATTAGAAGAAAAACAGAATAATGTAGAAGGCATGAATTG
AACCAATAATTTACTGACACGTATTAAAAGAGGTGGGAACGGGCCCACACATGGAGCTGAATGG
TCGGCTTTGATTGGCTTTAAGCATAGATGTCGGTCATGTGGGCCATTAGACACGTCGGCTAAAG
CTAGATTGCAGATATTTTTCGGGTAAATTACTAACATGCCATTACTCCTCTAATCCTTTTTTTT
TTTTTTTTTTTTTTTGTCACTCCTCTAATCCTTTTTAAGAATTAAGACGTTACCAAAAGAATGT
ACATGCAGCATAGCAGATTTTAATTTTGAAATCAATTTGTTTTTATAAGTATAACAGTTTAGGT
AAGGGATGTCGTTTTGTGCCTTGTATGATAACAGACGAAAGCTTTTTCCTTATAAAATTTAACA
GATGGGGCATTTGAGAACGCACAATTTCGGATTTTGCTTAAATTCATTAAATTATATGAATCGT
GCTCGGTTGAAAGATTTAAGACGTTGTGCCACTTGATAAATTGAGACGTTTCATGAACACGCAA
CCCGTAATTAACAGACCGAATTTTAAAAAGTTTAGGCATTGGGGTGGTCACTCTACCGACACAT
GATACCAAACAAAGCAATCGTTTTCGTTTGCTACATTGATTTAATTAATCTGTTACGTTAAACT
TTACAACAAATATTTTTGTGCACCACATGTAAACTTACCTGAGCTTAAAAGGAAAAAACAAAAA
CGAAAAAATCTAGTTTTCTTATAGAAATGTCAAATGTTACTGTATATGACTAAAAACAATATTA
AACTGAATCTAAAGTTCTAAATCATTATCAAACCGGTTTCTATTTATTTTAAACTGAAAATCTA
TAAAATTGACCCCAAAATATGATAATGTTATGTGCCAAGAATTTACCAATTAGACTATCGAAAC
TCTTTCTTTTAATAATTGAAAAGTCCATTGCCTAGTTCACTACTATGAAGAAGTAATCACTACT
TTCGTTTATGAACAAATATACTATAGATTCATAAATGTGATATTGAACCGGTCTATTGTTATGA
CTTATGAATATAGCTATATTCACTGAAATCTATATATTTCAAATGGTAAAAGAATTTTCATACT
ATAAAATATTATAGCTCTATTCACTGAAATCTATATATTTTAAATGGTAAAAACATTTAAATTT
AGCATATAATTTGGTTAACTGAAATCCATTAAAAAAAAGAGAGGTTCATACAGTAATCTTACTA
TCCCCATGAGGCCATGACTTGTGGCGGAACGGACTAATTTCAGGTGAAATTATTGAATCACCAT
ATATTTAATCTAACTCTTGCATGCTTTTTTCATCAAAATTTCTGATTTTCTTTACATAAAAACT
TTTCATGAGAATTTATCCATTGAAGCTCCATTGAGTAAACAAGTGTTTCCCCATAGATAAAATA
ATTTTATAGATTTTAGACACAAATGATCTAACTCTAAACACAAACTTGGAGAACAGCTAGAAAG
ACAAAATAAAAGAGACAATGATCAACAAAAAACAAAAAACAACATAAGTCCCACTCCCACATCA
TTATTATTCACTCTTATCATATTTTTCTCTTAATCAGACACTTTTTCTTTCTTCTCTTCCTCTC
CAGTGGTCTTGGCGTGATAACCTGGAAGCTTCTCTTTGATCTTGTCCATAAATCCCTTCTTCTC
CTCCGGGATGTCAGCAATCGGTGTTGCTGTTTCAACCAGCGGTGTGGTGTTGACGACTTGTGAA
TCCTCTGGTTTCTTGCTGTGGCCTGGAAGCTTCTCCTTGATCTTATCCATAAACCCTTTCTTCT
CTTCTTCCTCTGGTTTGTGATCCTCTACCGAATGTGGTGCTGGCATGGTGGTGACGACTGGTAC
ATCATCACCCCCTGGTTTCTCTCCGAGTGGAAACTTCTCCTTAATCCTGTCCATTACTCCTTGA
TTCTCTTCTTCCACTGTTTTCACATGATCTCCTTCAACAATCTTCTTCTTTTTCTCCTTCTTCT
TCTTCTCACCGTCTTCACCTTCTTCATCACTCGA
Conservation Information
Conserved circRNAs NA
PMCS 0.946220866
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017