Detail information of 1_circ_ag.14


General Information
CircRNA Name 1_circ_ag.14
ID in PlantcircBase ath_circ_003622
Alias At_ciR29
Organism Arabidpsis thaliana
Position chr1: 7145691-7149015  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 1_circ_ag.17 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23 1_circ_ag.24
Support reads 266/2916
Tissues leaf/root, leaf, aerial, inflorescences, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGACCAAACTATCTGCAACTACCTGTTAATGCCCCTAAATGTGCTCACCACAACAATCACCAT
GATGGTTTTATGAACTTCATGCACAGGGATGAGGAGatcaattactacccctcaaagtttgatc
ctgtccgctgcgctgagaaagttcccacccctacaaactcctacactggaattcgaacaaaggt
ccgattcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 747
Transcript exons: 7145691-7145798,7146010-7146042,7146127-7146369,7147892-
7148061,7148237-7148265,7148852-7149015
ATCAATTACTACCCCTCAAAGTTTGATCCTGTCCGCTGCGCTGAGAAAGTTCCCACCCCTACAA
ACTCCTACACTGGAATTCGAACAAAGGTCCGATTCCTGCCATGCTCCGCGGCATCTGGATCTCT
TACTGGTCTCAGGCTCTCAGGCTGATCGATCCTTGGGACAGAAACTTGCAAGCCGTCTGAACGT
GAGGCCAAGCATCTAGAGGCCAATCTCCATATAAGCTCAGTCTATGTGAGGTACAATCAATCTC
ATCGATCTATCATCGCTTGGTCGTTAAATCCGTCAAAAAGATAATCACATGTGTTGTTGTTTCT
TGTCTATATAATAATAATGCTTGTAATCCCAAAAACTCATGTTTCCTTCCTTTCTACTCTCACT
CTTTGAAGTCACTCATGACATTACCCAACTTACTTCTGCTGATTTTCTTCGAGGACCTGGTGTT
CAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCATGAGCGTGGCAGTCCCGAGACTCTCA
GAGATCCCCGTGGTTTTGCTGTTAAGTTTTACACCAGAGAGGAGGGGAACTTTGATCTTGTTGG
GAACAACATTCAGATGATAAGCTACTCCAGACCCGGATCTTCTCCTACGCTGATAGTCAGAGAC
ACCGTCTTGGACCAAACTATCTGCAACTACCTGTTAATGCCCCTAAATGTGCTCACCACAACAA
TCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAGGAG

Genomic sequence ATCAATTACTACCCCTCAAAGTTTGATCCTGTCCGCTGCGCTGAGAAAGTTCCCACCCCTACAA
ACTCCTACACTGGAATTCGAACAAAGGTCCGATTCCTGCCATGCCTTCTCTAAATCTTCAAATC
CTAAACTCAAGTTTATTAGAATATTGGTGCTAAGAAAACCTTTTAATTGCTAATGTTGCAGTGC
GTCATCAAGAAAGAGAACAACTTCAAACAGGCTGGAGACAGGTACAGATCATGGGCACCAGACA
GGCAAGACAGGTTTGTTAAGAGATGGGTGGAGATTCTATCGGAGCCACGTCTCACCCACGAGAT
CCGCGGCATCTGGATCTCTTACTGGTCTCAGGTCAGAACAAAAAAACACTCGGTCAAATTTCTA
CGTCCTTTTTACCAAGTTTCAGCAAACTAAAACATTATTTATCTCTCTGTATCTCTCAGGCTGA
TCGATCCTTGGGACAGAAACTTGCAAGCCGTCTGAACGTGAGGCCAAGCATCTAGAGGCCAATC
TCCATATAAGCTCAGTCTATGTGAGGTACAATCAATCTCATCGATCTATCATCGCTTGGTCGTT
AAATCCGTCAAAAAGATAATCACATGTGTTGTTGTTTCTTGTCTATATAATAATAATGCTTGTA
ATCCCAAAAACTCATGTTTCCTTCCTTTCTACTCTCACTGTCTTTGTAATCTCTTTTTACAATA
AATCAATGTTTCTTGAAGCAGTAAACAATTTCTAAGATTTATGGTGGTCGTTATACATATTATT
AATTCAGGAAAAAAAAGAGAAGATACCGTAATTGAACATGTATTATTTTAAGGAGAATCCTGAA
ATGGATCAACAATTGTCTAATTATGGTATAGTATCTGGCGAAATCAAAGACGATATCATCCACA
CGTAATTAGTTTGACTATTAATACGAGGATTATCATTTGGATAAGGATTAACAAAGACAAAACA
CATACGTGTTTTGGTGTTGAGCTAAAATAAGATATTTTGGCTCTCGCTATAAAAAAAAAATCGA
CAACAGTGCAGACACACGCCGATTTGCGAGATACACACAGTCTCACCTAAAAATCGCAAAAGAA
GAAAAATTCGGATCAAAATTGTCTTCAAGCATCATGGATCCATACAGGGTACATCGATTGATTC
TCTTTTTTTGTAATCTGTGATTTTACCTTACTTGATTTCGTATCGATTTGGTGTGATTTCGTGT
TGAATCCAAAGTGTATGAATGATCTCTCTCTCTCGGTTAAAATGATGCAAAATTGGGGTGATTG
TTCGACTTGTTGAGGTTTTTTTGTGTGAATCGATTTCTTTATTATATAGTGGAGATTGGGTTTC
GATTTGCATGCGTTGAAGATTCCACTGGAAAATTCAACATGTTTTTCCGTCTATTGATTGTTTA
TTTGTCAACATGCTCATGCTCATGCTCATGTTCTAATACACAAGTCTTAAGGCTGACGTGATCT
GTCAATATCGTTGTACATGTTTTAAGGTTTCTTTACGATTTTTTTAAAGTTATTTTAATCACTG
TGTTCAATTGTGAATATCATTGTTGCTTGTATCGTATTTTTTTAATTGATCATATATACTTATG
TGGAATTGTTATGTATCAAGTATCAATGTATCATTATTTGTCATAGACGTTTCTCCAATCTATG
GAAATTTGGTTAATTTTTTTGTGATCCAGTTCTTCTGAATTTATTTGTTGGTGTGCAGGTTCGT
CCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCGGGTGCTCCTGTCTGGAACAACA
ACTCTTCTTTGACTGTCGGAACTCGAGGTCCGTTTCTCTTTCTTATCTCTTGAATACAAATTAT
AACAAATATGTTGAACCAGTGGTTGTTAGAAATGCCCTTAAAGCTAGAGTAGTGGAAGCCAAAT
AATTTTATAAACGTTTGGATAATAATGTCATTAGTGTTTTTGTTGTGGACTTGCGTAAATCACA
TTTCTTCCTTCAGTTTTATGCCAAATCTGATATAATTCCTCAATGTTGATTCTGTCTCAGTTGC
TTGGATTTTTAGATATGTTAAGCGATGGTTTTATATATTGTCAGGTCCAATCCTTCTGGAGGAC
TATCATCTGCTTGAGAAACTCGCTAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCATG
CCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAAGTCACTCATGACATTACCCAACTTACTTCTGC
TGATTTTCTTCGAGGACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCAT
GAGCGTGGCAGTCCCGAGACTCTCAGAGATCCCCGTGGTTTTGCTGTTAAGTTTTACACCAGAG
AGGTTAGCTTTTTGTCTTATCCTTCCATTGTCTCTCTATTTTCTATAACCGATATCGATGTGTT
TGCTGATATTCAAACGTTTATTTGCTTATCTATTTCGTTTCACCACCTATATGATTACTTGCAA
ATCATATCATACTATACTGATGATTCCTCTTACCCTCTGTTTGCAAACTCAGGGGAACTTTGAT
CTTGTTGGGAACAACTTCCCTGTATTCTTCGTCCGTGATGGAATGAAATTCCCTGACATGGTCC
ATGCATTGAAACCGAATCCCAAGTCTCACATTCAGGAGAACTGGAGGATACTGGACTTCTTCTC
CCACCACCCAGAGAGTTTGCACATGTTTTCATTTCTCTTTGATGATCTCGGTATCCCACAGGAC
TACAGGCACATGGAAGGCGCTGGGGTCAACACTTACATGCTAATCAACAAAGCTGGAAAAGCTC
ACTATGTGAAATTCCACTGGAAGCCGACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCTAT
CAGAGTTGGAGGAGCCAATCACAGCCATGCCACCAAAGATCTCTATGACTCGATCGCAGCCGGG
AACTATCCGCAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGACAAATTTGACT
TCGATCCGCTTGATGTCACAAAGATCTGGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCG
CTTGGTCTTGAACAAAAACATCGACAACTTCTTTAATGAGAACGAACAGATTGCATTCTGTCCT
GCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAGCTACTCCAGACCCGGATCTTCTCCT
ACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTTAATGCCCCTAA
ATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.816177616
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017