Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_003603
Alias At_ciR181
Organism Arabidpsis thaliana
Position chr1: 7129925-7134218  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 1_circ_ag.17 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.3 1_circ_ag.4 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 1_circ_ag.14 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23 1_circ_ag.24
Support reads 47/44
Tissues leaf/leaf, aerial, inflorescences, seed
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTGTCACTTAACTTTTGTTTTCGGTTTTTCATTGCTATGTTACAGGATGGTAAGGTATCACA
GCTTGAGCATGTCTTCATTCGAGGCAGCAAAGTCAGgtttatggtcataccagacattctcaaa
catgctccaatgttcaagcggttagatgctagaatcaaggtatatatgctttttgaaccctgga
tgcagaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTATGGTCATACCAGACATTCTCAAACATGCTCCAATGTTCAAGCGGTTAGATGCTAGAATC
AAGGTATATATGCTTTTTGAACCCTGGATGCAGAATGATATTAGGATCTCTATACATATCTCCA
ACAAACATCTTACCTTACTTGCTTAATCAATGTAGGGAAAGAGCTCATCACTGGGTGTTGGCAG
AGGTAGAGGTGCAATGCGAGGGAAAGTAAGTTCACCCTCTCTCTCTTATGATTTAGTGCTCATG
AATGCAATGTTAGGAAGTTTTATGGAACTTGTTAAGATGTTCAAATCCTTGTTATCCCTTAATG
GTTTGTTTCTTCTTTGTCACTACTAATGGTTAGATTCTTGAATCTTTGTGATATTATCTTAAAG
CCGGCTGCCGGGCCCGGGCGTGGAACTGGAGGAAGGGGAGCGGTACCACCTGTGAGGAGATGAT
TGATTTTACGCTCAACATGTAAGCTTTGATTCTGGGATAGTCTTTCTGTGATATCCAGGTGAAA
GCCGCCTTTCTTGGTTCTGTCATTAATGCTTTAGAGAACACTGTAAAACCAAACAAGAGAGAGA
GATATCCAGATGCACTACTAGTTCTGTATTTTGGGTTACCAAGATGTTTGAATCATTGACAAGT
TTTCGTTGTGATCTATTTTCTTCTTTGCGCATTCTCCATTTCTGACAGTAGATGAGTAAAACAA
AGTACATTGTTTTCATAAAGGTCTTAATAAGACTAAGATCAGAAAACAAAGTTGGTCATTTATA
ACATTAATAATATAAGCTAGAAAATAATATTGTACTTGTATTTTCAACATGTAAAACCTTGTCT
ACTGCTATTTTCCCAAATTATCCAAAAAATTTCCAAAATGACTTGTACAATATTTAGTCTATAA
AAGTTTAGTTCCAGAGTACCAGCAAACACCAAAACGACTTGTAGAAGAATATTTGATGGAGTGT
AGAGGTTCGGTTCCTGAGTAATATTAACCAAAATGGGTCATAGAGTTTCCTGAGTATTTTACAA
CGATTATACATGAAATTAGTAGGATCAATTCACAAGTTGAATATAGGAAAGCATGATATCAAAA
GATTCTTTTTATTCTCTCTCAAGTGAAGAAAGATCTTAAAGACCTTAAAAAGAGAAGAACCGAA
CCAACCATTGTACATATCCCATTTGGGCAACTTGCTCTATCTCTCTTTCTCTCACACTCTTTTT
GTTCAAAAGAAAAACTCGAGTTATGTCATATTAGATTCTTATTATAGTTTTTTCCTCCCTTAAA
GCAGAAACCCAGCTGGTTCACTTCTTGCAGCATGAAAGAACTTAGATGTGTTGTACTTCCTGTG
AGCTTCCCTGTTCCTGCCTTGTGATGAAAAGCAACCATCTTTCTCGCACATGCCCTAGGAAAAA
ACACAAAACCCATTGTCAGGATTCCAAAATCTCATGTCATCGGGTTTTCAAAAAAATTCGAAAC
AATCAATGTATGTTCTTACAGTAGCTGTTCTTCGTTGTAGCCTGTGTGAAACTCACAGGTTTTG
CTCCATTCTTCAAATCCCTTAAGTGTACACTGAGCAGTGTAGATTGCTGAGGCCGCCAGCTTAG
ATGGAAGATACTCTAGCATCTCATACTCCACAAGGCAAAGCTCGATCATAAAGAATGATAAAAT
CTCAAGCTGACACCACAATTGCATATACCACACCGATTTAGATATTAGGCCTGATGGTTTCCGG
ACATAATGATTCAAGCTTTTTTAGTTAGGGAGATATATACCTTCTTGTCAGATTGGGCAGCTTT
GAGAAATCGTTTCATGAAAACATATGGAGTTGGTAGAGAGAAATTGAATTGCAAGGTGTTGGCC
ATTAGCTTCTCCTGCAATAGAAACCAAAAACAGGTAAATTCAACTATGAAGCATCAACCAGTGG
TAGTTAATGATCAAGACAAAGTTGTGTATTCACCATATCTAGCACTTCTCTTCTAGAGTAAGCT
TTGTCAGAGATCAAGATGAGATCATCTACCACTGGAACTGAAACTTCTTCATATTTACATGCGA
GCAACAAAGCAGTAACACCAACAAGCTGAAGCTTTTTCCTCACGATTTGATGAACCGCAAGGAA
TCTGTCGATGACAAAAATCTTCTTAGTTTTTCCCTAAAGACAAGAATGAACAAACATAACTTGT
ATTGAGATAACAAGAACTCAAGTTACATAAGAAGTCGTTCAAGTAGAGCATATACATGTATGAT
ATAGAAATTTATACGACATGGTATCAAGAAACAGAGCTTTTTATTATAAAAAATTCATCATCAG
CTATTAGAGAGGTCTCTAGTCTATATCTCTCATTGACGTTTTTGAAAAACAGAGCAGTATTTTT
ACAGAGTTAAAATAATTATTTTGTCGATTAAAAAAGTTAAATGTGTTTTTATTAATTACAACTA
GATGAACACCCATGCGTAGCATCGGTTTTTGTTTTTTGAATTGTCGGAAAAATATGATTATGGT
TTTTTTTTTATTTTGATGTTCAATATAATTATTACTATAATTCATATCTATTTAATATAATTAT
TAATTTTTATGATTAGTTTCATCTATAACTCGAAATATCAATTCTACTATAATATGAAAATTTA
TATATCTATTTTTCTAATATTTAACTATCATAATCACATACAACAACAATATATGATAGATTGA
TAAAATGAATGTAGTTATATTACTTATGTGTTTTGAAACTTGTCTAACTTAATTATAACAAACA
ATTTTTTATTCCATATATTTTTTTGTCATCTAGTAAACAATCACATCATGATATGCTAGTAATT
TAAGTCAACACTTTAATTATTTTCTTTTGCATATAACAATATAATGTCTTATGTTTTTTTTGGT
ATGTCTAATGTGTCAGATGACTATTACGTGAAAAAAATTGTTTATCAATATTACCAAGTTATCA
GAACGCACAAAAATATACAGAAAGAAGGTCATATGATAAAATCATATTCACAAAACGTAATAAT
AAAAAAATATCTAACTAAAATTACTAAACTAATATGAGGTGGCCAACTTTCATATATATGATTT
AAATGGAAAATCAAAGTATAAAAGGAAATTGATTTGCTAGAAAGAAGGAAAAAAACAAACCCTA
TAGATAGGTTCTTCAGCAAGGTAAGATAGAGAGAACGTGAGAGATCGATCATGGCGAATTCAAC
AGGTAAACCGACAAGTTCAACACAAGAAGATGAAGAAGTTACATACATATTAGCACAATTGATG
CAAGATGTTATGGATCGTGAAGAGGATATAGATGATGAAGACGATATAGATGATGAGGTTGCGT
CCCTTCCATTATTACTAGTAAGCCAAGCTAATCAAAAGCAGTCTAGGAAGAGGGAAGAAAAAAC
TGAAAAAAATCAACCTAAGAGGGTTAAGAATCAGAACATCATGAAAATAAATATCCATGACTTT
TCAGAAGAAACTCTGAGGTTAATTGAGGATTGGTACAACGCTGAACTCGATCCACAGGATATAT
TCGGCGATGATGAGGTGACGAGGCGATTCAGCCGACCGATAAAGAAGCAGTTGATGTCGAGCGA
CGTCGATACAGATCAAAGCAGGCTCATGTTATCGAAGGAGCAAGTGAAGGAGAAGATGCTTCCT
TTTCTAGAAGAATCAGAGGATCCGGTAAAGGGGGTTGATGTTTCGGTGTATGGACCAGACGGGG
AAGTTCAACAGATGAAGTTCAAGATGTGGAATGGGGATAAAACACCTGTCTTAACTTCAGGGTG
GATGCAGTTTGTGGCAGATTATGGTCTTTTGAAGACTTCTGATTTTGTCACTGTTTGGATGTTT
AGGCACATAAAGACTCGAAAGCTTTGCTTTGCTATTCACTACGTTACATTTTCTTTAAGAAATT
AACTAATCGAGTGGGATGATCTTGAAGACTACTGCTTTCTTGAATCCAAATTAGGGTGAGATCT
TCAAGAATTAATACAGTGGTCAAATGTGAATAGTCTCAAGTATGCAGGTCTTAAAGCTTCGTCT
TCTTTGCGAATAATGTGCTGTATGGGTTTTGAATGAACCTGTAATTATTGGGAAAGAACTACCT
GTAGTTTTTTAGTTCAGAAAGTCTTTAACTCTTTTAATGTGTTATTGTTCATAAGTATTCATAA
ATAATCTGTCAACTTAATGGGTTTGTTTATTAATAATTGTCACTTAACTTTTGTTTTCGGTTTT
TCATTGCTATGTTACAGGATGGTAAGGTATCACAGCTTGAGCATGTCTTCATTCGAGGCAGCAA
AGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.454503289
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017