Detail information of Os10g0181333_circ_g.9


General Information
CircRNA Name Os10g0181333_circ_g.9
ID in PlantcircBase osa_circ_006330
Alias NA
Organism Oryza sativa
Position chr10: 5581721-5584039  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.3 Os10g0181333_circ_g.4 Os10g0181333_circ_g.5 Os10g0181333_circ_g.6 Os10g0181333_circ_g.7 Os10g0181333_circ_g.8 Os10g0181333_circ_g.10 Os10g0181333_circ_g.11 Os10g0181333_circ_g.12 Os10g0181333_circ_g.13 Os10g0181333_circ_g.14
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0181200-02:3
Os10t0181200-01:9
Os10t0181200-02:3
Os10t0181200-01:9
Os10t0181333-00:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTTTCCACACTTGGCACAAGTCGATATAAGTGTTGTGTAAAGTTTACAATCAGGTTTTAGCC
CAGCTTCCTTTAGGAGCACCATAACTTGGAGAGCCCcatttgttctcaatctgtggtttcccta
agttgaatgtgacaacgatattgcccagtgaaagatcattgtcgaacatttgtagacacaagcc
taaaaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTGTTCTCAATCTGTGGTTTCCCTAAGTTGAATGTGACAACGATATTGCCCAGTGAAAGAT
CATTGTCGAACATTTGTAGACACAAGCCTAAAAACAAAATTCATTCATTAAGAAAGATTGTCAC
CAAATAAATTTGAGTAACAAAGAATAAAAGAGTAAATGCTACCAGGTGTAGCCGTGTAGGCATA
AGAAGGAAAACATAAGTGATATGAAGAAACAGAGAAAATTCAGGTTCTTCCAGAAAGTATCAAC
ACAACTGGAGAAAAAACTTACCAGTAAGACAACCAACGATTGTGGGATTGAGGTCAATACTGTC
TATTTTTAATTGTTCAAATAGATCCAAACCCAGTTGTGCTTCAGCATTCCTGTGGGGAAACTAT
TAGTACCTGAAGAGTGCGATAAGATTAGTTTGAAGAGTGCAGTTCCAGCTCAGAGTTGTTACCT
TTCACAAGCCACAAATAACACCGAATAGGTTATCATATTTGGACAGACTCCTAATCTCTTCATC
TCACTAAGGACCTCAAAAGACTTCAAAACTTGATCACCATCACCTGCATCATCGAGAAACTGTC
ATTATTTCCATGTCCAAAGAAGCAAGAGTTTTTAAAGAAAATGATAGGGAACAGCTATGAACAT
ATATATAGAAAATGAAAGTTGCACCAAGGTTCCTATATTTGACTATAATAGCACTGAGGCTTTT
AAAAGTAATTTGGCAGGTCTCAGAAACACATAATGGACTTCTACTTGGATCCTTCAATTTAGAA
AGTTAAGTTATTGTGTCTTTTTCACTGGCTGAAACTGTGATGTAAGCCACACATCTTTATTAAT
TGGCAAAACGTTAGTATTAGCTCACTGAAATGACAAAAAAAACATTTTATTATTGCTACAAGTA
TTCAGATGTTTGGACATACACAATGCGGTGATCAGAGCATTCATCATTGAAACGGTTGGCATTA
ATTTGATTGACTTGATCTCCTCAAATAGCTGCAATGCCTTTTTCCAGTCCTTGGCCTGAAACAA
GAATTTAAATGTCGTGATAATAACACCGAACTCAAATCAAAAGTACATGGAATACAAGTAAAAT
TGCAAAAGAAAGAATAACTAAGTGCATAAAAGACCTTGTGCTACTGTGGGGAGCAGAACTTAAT
AACTTGTTATATTGGTTTTCATCCAACAATTTATGTCAGAACTTACATTGCAGCAAGCACCCAT
TAATGAACTGTATGCAATGGTTCCAACTTGATATCCCTTTGCTCTTGCATCTTTCATTATCTCA
AAGGCAGCATCAGCCCTCCTAGCATGGCCAGCAACATCAACTAGAGCACTCAGAAACATCTGTA
GTGGATGGAATCAAACAAACATAACAGTTAAATAAGTCATGTGGGTTAAGCACATATCCCTTTA
ATGTTCTCTCTAGAAATAACACCTCATCAGGTTGTACTCCAATCTTGTTCATATCTTCATAGAT
CTTCAGAGCAAATCCTAAATCACCAGTCAAGCTACAGCTTCTCAATGCTATTGTGTAAACTTCT
GGAGTACCCTTTATATTGTACTCCTGAAGCATTTTGTATACCTCACGAGCTCGATCAGCCTACA
CAAACAAATGTTTTTTTGAGTTAGATACTATATAGCCTATTTCGCGTTTACAACAAAGGATCTG
CAGAACACCTGGCCAGCCTGAATACATGTCTTCATCAGAGCTCCAACTGTGACATGATCAGGAA
GAATCGGTTTGGATCCTTTAGATTCAGAGGCTTCTGCTGTCATTTCTGATAGAACATCAAAAGC
TCGAGCAACCGCTCCAGATTCACCGCATGCACTGATCAAAGCATTAAAGACAACTCGATCTGGC
TTCACCTTCTACTGCAAGTATGGCCCAGTAAGTTCAACAAACATGGAAAGCGCATAGAAGTGAT
TCACCAGTAGCATTTGCAGCACAGGTGAATGGAAGACATGTAATATAAAAAGAAAAAATATCTA
CCACTTCACCTTTGAACTCATGATACCATAAGCACCAAATGCTTTTGCTACTTGACCAGCTTTT
GCACAGCCATCAATCAGTGCACTATATGTGTTAACATTTGGCTCTATTCCAGCACTGACCATCT
CATGGAAGACCTTAAATATAAGTACACAATAGATATAAAGCTATCATATTTTTAAGTCAAACAT
ATATGTATGAATATGTCATTTAGTTACCTCAAACATAGCATCAACTTTTCCACACTTGGCACAA
GTCGATATAAGTGTTGTGTAAAGTTTACAATCAGGTTTTAGCCCAGCTTCCTTTAGGAGCACCA
TAACTTGGAGAGCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.174096144
Functional Information
Coding potential Y
Potential coding position 5584027-5583993(-)
Potential amino acid sequence MVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQV
AKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVT
VGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV
QPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEE
IKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLG
LDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLGKPQIENKWGSPSYGAPKG
SWAKT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017