Detail information of 1_circ_ag.24


General Information
CircRNA Name 1_circ_ag.24
ID in PlantcircBase ath_circ_003632
Alias NA
Organism Arabidpsis thaliana
Position chr1: 7146139-7149554  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method in-house script
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 AT1G20150_circ_g.1 AT1G20160_circ_g.1 AT1G20190_circ_g.1 AT1G20190_circ_g.2 AT1G20190_circ_g.3 AT1G20200_circ_g.1 AT1G20200_circ_g.2 AT1G20200_circ_g.3 AT1G20220_circ_g.1 AT1G20220_circ_g.2 AT1G20220_circ_g.3 AT1G20220_circ_g.4 AT1G20220_circ_g.5 AT1G20220_circ_g.6 AT1G20225_circ_g.1 AT1G20260_circ_g.1 AT1G20260_circ_g.2 AT1G20260_circ_g.3 AT1G20260_circ_g.4 AT1G20260_circ_g.5 AT1G20270_circ_g.1 AT1G20270_circ_g.2 AT1G20270_circ_g.3 AT1G20330_circ_g.1 AT1G20340_circ_g.1 AT1G20340_circ_g.2 AT1G20340_circ_g.3 AT1G20340_circ_g.4 AT1G20340_circ_g.5 AT1G20340_circ_g.6 AT1G20370_circ_g.1 AT1G20370_circ_g.2 AT1G20380_circ_g.1 AT1G20380_circ_g.2 AT1G20410_circ_g.1 AT1G20410_circ_g.2 AT1G20410_circ_g.3 AT1G20440_circ_g.1 AT1G20440_circ_g.2 AT1G20440_circ_g.3 AT1G20440_circ_g.4 AT1G20440_circ_g.5 AT1G20440_circ_g.6 AT1G20440_circ_g.7 AT1G20440_circ_g.8 AT1G20440_circ_g.9 AT1G20440_circ_g.10 AT1G20440_circ_g.11 AT1G20440_circ_g.12 AT1G20440_circ_g.13 AT1G20440_circ_g.14 AT1G20440_circ_g.15 AT1G20440_circ_g.16 1_circ_ag.17 AT1G20440_circ_g.18 AT1G20440_circ_g.19 AT1G20440_circ_g.20 AT1G20450_circ_g.1 AT1G20450_circ_g.2 AT1G20450_circ_g.3 AT1G20450_circ_g.4 AT1G20450_circ_g.5 AT1G20450_circ_g.6 AT1G20450_circ_g.7 AT1G20450_circ_g.8 AT1G20450_circ_g.9 AT1G20450_circ_g.10 AT1G20450_circ_g.11 AT1G20450_circ_g.12 AT1G20510_circ_g.1 AT1G20540_circ_g.1 AT1G20550_circ_g.1 AT1G20550_circ_g.2 AT1G20550_circ_g.3 AT1G20575_circ_g.1 AT1G20575_circ_g.2 AT1G20575_circ_g.3 AT1G20580_circ_g.1 1_circ_ag.2 1_circ_ag.3 1_circ_ag.4 AT1G20610_circ_g.1 AT1G20610_circ_g.2 AT1G20610_circ_g.3 AT1G20620_circ_g.1 AT1G20620_circ_g.2 AT1G20620_circ_g.3 AT1G20620_circ_g.4 AT1G20620_circ_g.5 AT1G20620_circ_g.6 AT1G20620_circ_g.7 AT1G20620_circ_g.8 1_circ_ag.9 AT1G20620_circ_g.10 AT1G20620_circ_g.11 AT1G20620_circ_g.12 AT1G20620_circ_g.13 1_circ_ag.14 AT1G20620_circ_g.15 AT1G20620_circ_g.16 AT1G20620_circ_g.17 AT1G20620_circ_g.18 AT1G20620_circ_g.19 AT1G20620_circ_g.20 AT1G20620_circ_g.21 AT1G20620_circ_g.22 AT1G20620_circ_g.23
Support reads 274
Tissues leaf
Exon boundary   No-No
Splicing signals   CA-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCAAGAACGATTCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAAT
CCGCAGCATTTGGATCTCTTACTGGTCTCAGGCAGAtcgatccttgggacagaaacttgcaagc
cgtctgaacgtgaggccaagcatctagaggccaatctccatataagctcagtctatgtgaggta
caatcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGATCCTTGGGACAGAAACTTGCAAGCCGTCTGAACGTGAGGCCAAGCATCTAGAGGCCAATC
TCCATATAAGCTCAGTCTATGTGAGGTACAATCAATCTCATCGATCTATCATCGCTTGGTCGTT
AAATCCGTCAAAAAGATAATCACATGTGTTGTTGTTTCTTGTCTATATAATAATAATGCTTGTA
ATCCCAAAAACTCATGTTTCCTTCCTTTCTACTCTCACTGTCTTTGTAATCTCTTTTTACAATA
AATCAATGTTTCTTGAAGCAGTAAACAATTTCTAAGATTTATGGTGGTCGTTATACATATTATT
AATTCAGGAAAAAAAAGAGAAGATACCGTAATTGAACATGTATTATTTTAAGGAGAATCCTGAA
ATGGATCAACAATTGTCTAATTATGGTATAGTATCTGGCGAAATCAAAGACGATATCATCCACA
CGTAATTAGTTTGACTATTAATACGAGGATTATCATTTGGATAAGGATTAACAAAGACAAAACA
CATACGTGTTTTGGTGTTGAGCTAAAATAAGATATTTTGGCTCTCGCTATAAAAAAAAAATCGA
CAACAGTGCAGACACACGCCGATTTGCGAGATACACACAGTCTCACCTAAAAATCGCAAAAGAA
GAAAAATTCGGATCAAAATTGTCTTCAAGCATCATGGATCCATACAGGGTACATCGATTGATTC
TCTTTTTTTGTAATCTGTGATTTTACCTTACTTGATTTCGTATCGATTTGGTGTGATTTCGTGT
TGAATCCAAAGTGTATGAATGATCTCTCTCTCTCGGTTAAAATGATGCAAAATTGGGGTGATTG
TTCGACTTGTTGAGGTTTTTTTGTGTGAATCGATTTCTTTATTATATAGTGGAGATTGGGTTTC
GATTTGCATGCGTTGAAGATTCCACTGGAAAATTCAACATGTTTTTCCGTCTATTGATTGTTTA
TTTGTCAACATGCTCATGCTCATGCTCATGTTCTAATACACAAGTCTTAAGGCTGACGTGATCT
GTCAATATCGTTGTACATGTTTTAAGGTTTCTTTACGATTTTTTTAAAGTTATTTTAATCACTG
TGTTCAATTGTGAATATCATTGTTGCTTGTATCGTATTTTTTTAATTGATCATATATACTTATG
TGGAATTGTTATGTATCAAGTATCAATGTATCATTATTTGTCATAGACGTTTCTCCAATCTATG
GAAATTTGGTTAATTTTTTTGTGATCCAGTTCTTCTGAATTTATTTGTTGGTGTGCAGGTTCGT
CCTTCAAGCGCTCATGATTCCCCTTTCTTCACTACAAACTCGGGTGCTCCTGTCTGGAACAACA
ACTCTTCTTTGACTGTCGGAACTCGAGGTCCGTTTCTCTTTCTTATCTCTTGAATACAAATTAT
AACAAATATGTTGAACCAGTGGTTGTTAGAAATGCCCTTAAAGCTAGAGTAGTGGAAGCCAAAT
AATTTTATAAACGTTTGGATAATAATGTCATTAGTGTTTTTGTTGTGGACTTGCGTAAATCACA
TTTCTTCCTTCAGTTTTATGCCAAATCTGATATAATTCCTCAATGTTGATTCTGTCTCAGTTGC
TTGGATTTTTAGATATGTTAAGCGATGGTTTTATATATTGTCAGGTCCAATCCTTCTGGAGGAC
TATCATCTGCTTGAGAAACTCGCTAACTTTGACAGGGAGCGGATTCCTGAGAGGGTTGTTCATG
CCAGGGGAGCCAGTGCTAAGGGTTTCTTTGAAGTCACTCATGACATTACCCAACTTACTTCTGC
TGATTTTCTTCGAGGACCTGGTGTTCAGACTCCTGTTATCGTTCGTTTCTCAACTGTCATCCAT
GAGCGTGGCAGTCCCGAGACTCTCAGAGATCCCCGTGGTTTTGCTGTTAAGTTTTACACCAGAG
AGGTTAGCTTTTTGTCTTATCCTTCCATTGTCTCTCTATTTTCTATAACCGATATCGATGTGTT
TGCTGATATTCAAACGTTTATTTGCTTATCTATTTCGTTTCACCACCTATATGATTACTTGCAA
ATCATATCATACTATACTGATGATTCCTCTTACCCTCTGTTTGCAAACTCAGGGGAACTTTGAT
CTTGTTGGGAACAACTTCCCTGTATTCTTCGTCCGTGATGGAATGAAATTCCCTGACATGGTCC
ATGCATTGAAACCGAATCCCAAGTCTCACATTCAGGAGAACTGGAGGATACTGGACTTCTTCTC
CCACCACCCAGAGAGTTTGCACATGTTTTCATTTCTCTTTGATGATCTCGGTATCCCACAGGAC
TACAGGCACATGGAAGGCGCTGGGGTCAACACTTACATGCTAATCAACAAAGCTGGAAAAGCTC
ACTATGTGAAATTCCACTGGAAGCCGACTTGTGGGATCAAATGCCTGTCGGATGAGGAAGCTAT
CAGAGTTGGAGGAGCCAATCACAGCCATGCCACCAAAGATCTCTATGACTCGATCGCAGCCGGG
AACTATCCGCAGTGGAATCTCTTCGTTCAGGTGATGGATCCTGCCCATGAAGACAAATTTGACT
TCGATCCGCTTGATGTCACAAAGATCTGGCCTGAAGATATCTTGCCTTTACAACCTGTTGGTCG
CTTGGTCTTGAACAAAAACATCGACAACTTCTTTAATGAGAACGAACAGATTGCATTCTGTCCT
GCTCTTGTGGTTCCAGGCATCCACTATTCAGATGATAAGCTACTCCAGACCCGGATCTTCTCCT
ACGCTGATAGTCAGAGACACCGTCTTGGACCAAACTATCTGCAACTACCTGTTAATGCCCCTAA
ATGTGCTCACCACAACAATCACCATGATGGTTTTATGAACTTCATGCACAGGGATGAGGAGGTA
ATCTTATCTCTCGGCTCTAGAAACTCCCAGATACTTAAATTCGCAATCACATTTATATGAAGTG
AATTTGTTGCTTTCCAATTCCAGGTCAATTACTTCCCTTCAAGGTTGGATCCAGTTCGCCATGC
CGAAAAATACCCTACAACTCCTATTGTCTGCTCTGGAAATCGTGAGAAGGTCAGAGTCCTCTAC
ATACATTAATTTTTGATCACAAGTTTTATCCTCATAAGTCATAGTTAAAACTCAAATGTCATCT
TTATATCACAGTGCTTCATCGGGAAGGAGAACAACTTCAAGCAACCAGGGGAGAGATACCGGTC
CTGGGATTCAGACAGGTAAACACTAAAAACTCAAAAACCACATTGCAAAATCAACAATTACACA
TGAACCACAAATGTCATAATTCATTCTAATGGTCTTTTGTTTTGTACCAATAGGCAAGAACGAT
TCGTGAAGCGTTTTGTTGAAGCGCTTTCGGAGCCTCGTGTCACGCACGAAATCCGCAGCATTTG
GATCTCTTACTGGTCTCAGGCAGA
Conservation Information
Conserved circRNAs NA
PMCS 1.081988396
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Dou et al., 2017