Detail information of Os01g0896700_circ_ag.1


General Information
CircRNA Name Os01g0896700_circ_ag.1
ID in PlantcircBase osa_circ_005213
Alias Os01circ30244/Os_ciR466
Organism Oryza sativa
Position chr1: 38969102-38973742  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0896700_circ_ag.2 Os01g0896700_circ_ag.3 Os01g0896700_circ_g.1 Os01g0896700_circ_ag.2 Os01g0896700_circ_ag.3 Os01g0896700_circ_ag.4 Os01g0896700_circ_ag.5 Os01g0896700_circ_ag.6 Os01g0896700_circ_ag.7 Os01g0896800_circ_g.1
Support reads 5/2595/858
Tissues panicle/root/shoot, seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCC
GCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGggagggtttgtcaagacccagaagaccc
atgcctacttcaagcgattccaagtcaagttcaagagacggaggcgtaagttcaatataatcct
ttcatgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAGGGTTTGTCAAGACCCAGAAGACCCATGCCTACTTCAAGCGATTCCAAGTCAAGTTCAAGA
GACGGAGGCGTAAGTTCAATATAATCCTTTCATGTGGCTCATGCATTCTGTGCTTGTAATATAG
CTAGGTTTTGATGTACTTAATCTCATTTGTTATTGTTTGCAGAGGGCAAGACTGACTACAGGGC
CAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTG
AGATTTGTATCCTTTTAGTTCTTTTTATCATGGTATTTATGCATTTCCTCGTAAATTCTGGTTG
TTATACCATATCTTTATTATTATCATACTGTATGCCTTAATAGTACATTAGACAAACAAAGATA
TCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGATATCGTGATGGCTGCTGCCTACTCCCA
TGAGCTGCCTCGTTATGGTCTTGAAGTTGGTCTCACCAACTATGCGGCAGGTAGTTTCCTCAGC
TGAATGAATATGCAGAATGCTGGTTTGTCTTGCTGTATGCATACAATTTAATTCCTCTGTTTTG
ATGCATTGTGTAGCTTACTGCACTGGCTTGCTTCTGGCTCGTCGTGTGCTCACGCTCCGTGGTT
TGGACCAGGAGTACGAGGGCAATGTTGAGGTACAAATATAATCCTTATAATTTTTTTACTCTAT
ATGCTCATGCTGGTCTTGATCTTGATATGTATGATTCCTTTGGTCAGGCCACTGGGGAGGACTA
CTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGG
ACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGGTGTGTTGTGCTTTGATCTCAACTGTTG
GCTGCTGTAATAATAGTTGATTTGTCACTTGAACATCAAATTCATCAGCTCTTTTAGAAACACA
ACCGTCAATATAACCTTTGGATTGTTGATCTGTATTAGTAGCTCATGTGGATATACTTCTCTTC
TTCTGCAGGGAGCTTTGGATGGTGGTCTTGACATTCCTCACAGTGACAAGAGGTTTGCTGGGTT
CAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTACGGTGGGCACGTG
GCTGACTACATGAGGGTGAGCTGGCACTATTAGATCAATTGTTCGTGCTGTGGGTTGTATTAGG
AATTATGTAGCTGCCTTGATGTTTATAACGTTGACTAAAGCATTATATAAAGTTTGGATTATTT
GTTACTGTTTAGCTCAGTCTGCTTTATTTTGATTGTCATCAGGATAAATTTTCTTCTTATGTAC
TTGTTGCAGTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACCTCA
AGAAGGGAATTGACGCTGATGGCATGGAATCACTGTACAAGAAGGTCCATGCTGCCATCCGCGC
CGATCCTACCATGGCCAAATCGACCAAGAAGGAACCGGCTACCCACAAGAGGTATATTAAGCTG
GCTGATGATTTTCGTAAAGATTATTTGTGATGTCCATGTATGATGTAACTAACTTGCCATCTCT
TTGCTGCAGATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGA
TTGAATGCTCTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAG
AGAGTAGCCTTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGT
TTACCTGTAGTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCACTCTGCTCAAAGAA
CCTATTTCTTTCGGTTTTTGATTCTCAACCTTGAGCTATCAGTTATCTTATTTATGTGAGAAGC
TGCCGTTTGGATATTGATATAATTGTGTTCTGCCTGCCTCTTCACTTGTCTTTGTTTTATGTTA
TTCCTTTTTAGCAATGGGCAGTCAAATCTGCTGGTCTTGCCTGCATTTATTCTGAACTGGAGCT
GCCTTGGGCTCTTTACTCGCTAGATGAAGTTTGATCGCTTGCTTGTGTCATTCATTCAGTTTGA
GATTGACATCTTGCTTGCTCATTCATTATGTTGATAACAATGTGAAGCATGTAGTTCCTAGTTT
TGACAGATTTTGACATATGGTTTCTATATAGTGATTTTGGCAGGAAATACGAGTCCATCACTAT
TTTCTAACTAAAGTTTACCGTCCAGCATGAGTTAGAACTCTTTGAATAAAATATTTTCACACAT
TCTTGTTGATTGTCCAGCATGAGGATTGAAAAAGACTATAAAATCTAAAAAAAAATTCACACAT
TCCTGTCTTAGATTCTCCTGTTTGTCTTTACAACTGGTTTTGTAATGCTAACAATGCACACACC
GCCTCCAAATCAATCTCAAATTTCACATATTACTGCCTCGAATGCTCCAATTTTCACCAATTCG
TCTTTTAAATTGGTTTGTTACAACTAAGTAAGCCAAAGCGAGCGAATCTCACTTGGTACTTGGT
AGCTCTTCATGAACTAATCTAAACGACAGCCACTTCGCAGCAACATTTCCGAAGCAGATTTTAG
ATTTTTAGTCAAAGTTAATGGGTTAATGGATTGACATCCAAACTAAGATAATAAAAATAAGCGG
TACCGCAACTAGAAGGGAGTCACGGGAGCAGCGGCTTGCAGGAATCAGTTTATGAACAATGCAG
GCATATCAAAATTTCATGTAGATCTATATGATCGGATTATGCCAACTTGCCAAGCATGAGTTCA
TGAGAATGCTAACACTACCTGCAACACCTTAAAAGTACTAATCCTCTAATATAACAACGAAGCA
TACTGAAATCTCGTCAGCATACTCATGCAAAATGTGAAGCAATGTCGCATCTCGTGATCATTTC
TGCTGTATTGCAACGTACATATGGTGCCGTCATGTGTACTACCCACAATTCACATACTCCCTCC
GTCTCAAAATATACCTATTTCTAATACAGTGTCTTATCCCAAAATAAACCTATTTCTTCACCTA
CCTCCTCCTCTCAACCAATCACAACATTCTTCTTCACCTATTTTCTCTTTTCAACCAATCACAC
ACTTCCTCCAATCATTCTCACCTAATTTCTTAATACCCGTGCCAACCTTAAAAATAGCTTCATT
TTGGGACGGAGGAAGTACATGGTAAGAGAGCAGAATAACTTCCAGCGTGGATCTAACTACTAAG
TACTCTCTCCGTTTTAGGTTATATGACGTTTTGACTTTGGTCAAAATCAAACTATTTCAAATTT
GACTAAGTTTATAAACAAATATATTAATATTTATAATACTAAATTAGTTTTATCAAATCAACAT
CTGACACAGAAGGGGTAGAGACTAGAGAGCACACTGATTGTCTCTCGCGCGTTCTTCTTGGTCA
CATTAACAAAAGACCTGAAGATACAAACATCGAGTGAGTGAGTGACCAGACATAAGGACGGATG
ATTACACAGTTCTGAAAGAACACATTTTGACTAGAACAGTAATGTCAGGCTGGATAAGAATATA
GCGTCAAGGGGCTAAACAGAGCTACTTGGAGGAGCACGGAGCAGCAGCAAATTGAATACCCATA
AGAATATATAAGATGATGTGATTATGTTACTGAACGGAATGAACACTAATTTACTTAATACATA
GAACCACGGTCCGACCGATGAACCGGGGTCTAACCAGTGAACCGACAAGCTCATCGGGTCAGTC
CTCGGTCCGACTTTTTCTACTATGGTGGGGCGTGGTCGGCGGCACATGTCCCCGACGTCCCTGG
CATCCCGACGGAGATGGACGCCGGCAGACACAGAGTTGGCACGGGAGGATGCGGCACAGGGGTT
GTTGACCGTGCGTCGCTGGTTCAACGTTGATGGAGTTGGAACGCCGCCACCGCGACCTCCCCGA
GCTTCGGCATCCCCCATCTTAAGCGAGATCGGTAGTGTCGCCGCCTCACCTCCCCAAGCGCGCG
CGTCGCTGGTCCAACGCGGACGGAGCCGGAACACCGCCGCCGTGACTTCCGCCAGTCCTCCATT
CAGCGCTTGTCTCGCTGGCGCCACGGGAGATGTAAAAGATAATAGGGGAAGAGGAGAGTTGCTG
ACGAGTGGGACCCATAAGCTGACTCAGCTAGTCAGCAGAATCAAAGCTGCCACGTAGGACAAAA
CCGTCTCCGAAACCGCGAGGGAGGTGATTTACTCTGGTTTTCAGAGAAGGAGGCGTTATACCCA
GTTTTCCGGTTGAGGGATATTATTCACGCAAGCGTAACAGAAAAGGGACGCAAAACGGACTTAT
TCCAACGAGGAATTATCTCCTTTCCCAGGCCCACAGACTGAGGCCCATCAAGCCGCGGAGAGCA
ACCCCTCAAGACGATCTGAGCCGTCCGATCCATCTCCCGCACCGCATCCGTCCGCCCGATGCGC
TCGCGCGACTCGGGTTTCTTCTTCGAGTGGATGGATAAAAGGGCTCGAGGGCAGCCGCCGCTAT
AAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCC
GCAGCGGAGCAGCCACAGCAGGCGAGCGACATG
Conservation Information
Conserved circRNAs osi_circ_011056
PMCS 0.513233728
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA