Detail information of Os01g0896700_circ_ag.6


General Information
CircRNA Name Os01g0896700_circ_ag.6
ID in PlantcircBase osa_circ_005220
Alias Os01circ30247/Os_ciR410
Organism Oryza sativa
Position chr1: 38970711-38975956  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0896700_circ_ag.1 Os01g0896700_circ_ag.2 Os01g0896700_circ_ag.3 Os01g0896700_circ_g.1 Os01g0896700_circ_ag.2 Os01g0896700_circ_ag.3 Os01g0896700_circ_ag.4 Os01g0896700_circ_ag.5 Os01g0896700_circ_ag.7 Os01g0896800_circ_g.1
Support reads 2/137/36
Tissues panicle/root/seed, pistil
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGATGGCATGGAAGCACTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGC
CAAATCAACCAAGAAGGAACCGGCGACCCACAAGAGatacaacctcaagaagctgacctacgag
cagaggaaggccagtctcgtcgaaagattgaatgctctcaactcctccgctggtgctgatgatg
atgacgag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1032
Transcript exons: 38970711-38970942,38970956-38971056,38973664-38973743,38
974424-38974498,38974782-38974909,38974997-38975081,3897
5165-38975287,38975556-38975586,38975780-38975956
ATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCT
CTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAGAGAGTAGCC
TTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGTTTACCTGTA
GTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCAACCTATTTCTTTCGGTTTTTGAT
TCTCAACCTTGAGCTATCAGTTATCTTATTTATGTGAGAAGCTGCCGTTTGGATATTGATATAA
TTGTGTTCTGCCTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGC
GGAGCAGCCACAGCAGGCGAGCGACATGGAGGGAGGGTTTGTCAAGACCCAGAAGACCAATGCC
TACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACGGAGGCGACAAACAAAGATATCACAGCTCA
AATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCT
CGCTATGGTCTTGAAGTTGGTCTCACCAACTATGCGGCAGGTAGCTTATTGCACTGGCTTGCTT
TTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGGTTA
GGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTG
GATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGGTCTACGGTG
GGCACGTGGCTGACTACATGAGGCTTGCAGTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAG
CCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAA
GGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGGCGACC
CACAAGAG

Transcript length: 1037
Transcript exons: 38970711-38971024,38973660-38973743,38974425-38974498,38
974782-38974909,38974969-38975081,38975165-38975317,3897
5786-38975956
ATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCT
CTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAGAGAGTAGCC
TTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGTTTACCTGTA
GTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCACTCTGCTCAAAGAACCTATTTCT
TTCGGTTTTTGATTCTCAACCTTGAGCTATCAGTTATCTTATTTATGTGAGAAGCTGCCCTTCT
CCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCA
GGCGAGCGACATGGGGGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCC
AAGTCAAGTTCAAGAGACGGAGGCGACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACC
ATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTGAAG
TTGGTCTCACCAACTATGCGGCAGATTTAATTCCTCTGTTTTGATGCATTGTGTAGCTTATTGC
ACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCA
ATATTGAGGTTAGGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTC
CGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCA
AGGTGTGTTGTGCTTTGATCGCAACTGTTGGCTGGTCTATGGCGGAGGAGGAACCTGAGAAATT
CCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTAC
AAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGG
CGACCCACAAGAG

Transcript length: 1050
Transcript exons: 38970711-38970942,38973661-38973743,38974425-38974498,38
974565-38974665,38974783-38974909,38974941-38975081,3897
5165-38975285,38975786-38975956
ATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCT
CTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAGAGAGTAGCC
TTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGTTTACCTGTA
GTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCCTTCTCCCACCTCTCCCCTCTCCT
CGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGGGGGAG
GGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGAGACG
GAGGCTTTGTCATTGTTTGCAGAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACC
AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGACAAACAAAGATATCACAGCTC
AAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCC
TCGCTATGGTCTTGAAGTTGGTCTCACCAACTATGCGGCAGTGCTGGTTTGTGTTGCTGTATGA
ATGCAATTTAATTCCTCTGTTTTGATGCATTGTGTAGCTTATTGCACTGGCTTGCTTTTGGCTC
GCCGTGTGCTCAAGCTCCGTGGTTTGGACCAGGAGTACGAGGGCAATATTGAGGTTAGGCCACT
GGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTG
GCCTCATTAGGACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGGTCTATGGCGGAGGAGG
AACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCAT
GGAAGCACTGTACAAGAAGGTCCATGCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACC
AAGAAGGAACCGGCGACCCACAAGAG

Transcript length: 897
Transcript exons: 38970711-38970942,38973657-38973743,38974425-38974498,38
974782-38974909,38974998-38975081,38975165-38975285,3897
5786-38975956
ATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCT
CTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAGAGAGTAGCC
TTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGTTTACCTGTA
GTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCATTCCTTCTCCCACCTCTCCCCTC
TCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGGG
GGAGGGTTTGTCAAGACCCAGAAGACCAATGCCTACCACAAGCGTTTCCAAGTCAAGTTCAAGA
GACGGAGGCGACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATC
GTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTGAAGTTGGTCTCACCAACT
ATGCGGCAGTAGCTTATTGCACTGGCTTGCTTTTGGCTCGCCGTGTGCTCAAGCTCCGTGGTTT
GGACCAGGAGTACGAGGGCAATATTGAGGTTAGGCCACTGGGGAGGACTACTATGTTGAACCAG
CTGATGAAAGGCGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAA
CCGTGTCTTTGGTGCCCTCAAGGTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTT
CAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGGTCCAT
GCTGCCATCCGTGCTGATCCTACCATGGCCAAATCAACCAAGAAGGAACCGGCGACCCACAAGA
G

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_002587*
PMCS 1.111493006
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA