Detail information of BGIOSGA004977_circ_ag.1


General Information
CircRNA Name BGIOSGA004977_circ_ag.1
ID in PlantcircBase osi_circ_011056
Alias Chr01:40239579_40244257(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 42625163-42629841  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA004977_circ_g.1 BGIOSGA004977_circ_ag.2 BGIOSGA004977_circ_ag.3 BGIOSGA004977_circ_ag.4 BGIOSGA004977_circ_ag.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAAACCCTAACTATTCCTTCTCCCACCTCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCC
GCCGCAGCGGAGCAGCCACAGCAGGCGAGCGACATGgggagggtttgtcaagacccagaagacc
catgcctacttcaagcgtttccaagtcaagttcaagagacggaggcgtaagttcaatataatcc
tttcatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAGGGTTTGTCAAGACCCAGAAGACCCATGCCTACTTCAAGCGTTTCCAAGTCAAGTTCAAG
AGACGGAGGCGTAAGTTCAATATAATCCTTTCATGTGGCTCATGCATTCTGTGCTTGTAATATA
CCTAGGTTTTGATGTACTTAATCTCATTTGTCATTGTTTGCAGAGGGCAAGACTGACTACAGGG
CCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGT
GAGATTTGTATCCTTTTAGTTCTTTTTATCATGGTATTTATGCATTTCCTTGTAAATTCTGGTT
GTTATACCATATCTTTATTATTATCATACTGTATGCCTTAATAATACATTAGACAAACAAAGAT
ATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGATATCGTGATGGCTGCTGCCTACTCCC
ATGAGCTGCCTCGTTATGGTCTTGAAGTTGGTCTCACCAACTATGCGGCAGGTAGTTTCCTCAG
CTGAATGAATATGCTGAATGCTGGTTTGTCTTGCTGTATACATACAATTTAATTCCTCTGTTTT
GATGCATTGTGTAGCTTACTGCACTGGCTTGCTTCTGGCTCGCCGTGTGCTCACGCTCCGTGGT
TTGGACCAGGAGTACGAGGGCAATGTTGAGGTACAAATATAATACTTATAATTTTTTTACTCTA
TATGCTCATGCTGGTCTTGATCTTGATATGTATGATTCCTTTGGTCAGGCCACTGGGGAGGACT
ACTATGTTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAG
GACAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGGTGTGTTGTGCTTTGATCTCAACTGTT
GGCTGCTGTAATAATAGTTGATTTGTCACTTGAACATCAAATTCCTCAGCTCTTTTAGAAACAC
AACCGTCACTATAACCTTTGGATAGTTGATCTGTATTAGTAGCTCATGTGGATATATTTCTGTT
TTCTTCTGCAGGGAGCTTTGGATGGTGGTCTTGACATTCCTCACAGTGACAAGAGGTTTGCTGG
GTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTACGGTGGGCAC
GTGGCTGACTACATGAGGGTGAGCTGGCACTATTAGATCAATTGTTCGTGCTGTGGGTTGTATT
AGGAATTATGTAGCTGCCTTGATGTTTATAACATTGACTAAAGCATTATATAAAGTTTGGATTA
TTTGTTACTGTTTAGCTCAGTCTGCTTTATTTTGATTCTCATCAGGATAAATTTTCTTCTTATG
TACTTGTTGCAGTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACC
TCAAGAAGGGAATTGACGCTGATGGCATGGAATCACTGTACAAGAAGGTCCATGCTGCCATCCG
CGCTGATCCTACCATGGCCAAATCGACCAAGAAGGAACCGGCTACCCACAAGAGGTATATTAAG
CTGGCTGATGATTTTCGTAAAGATTATTTGTGATGTCCATGTATGATGTAACTAACTTGCCTCT
TTGCTGCAGATACAACCTCAAGAAGCTAACCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGA
TTGAATGCTCTCAACTCCTCAGCTGGTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAG
AGAGTAGCCTTATCACAGTAGTTTCATCTTATGCTGCCAAACAAACTCCTTATGGCATTTAAGT
TTACCTGTAGTCTTGCAATTTGCAACAGGCATTTTTGTTTATGTTCTGCACTCTGCTCAAAGAA
CCTATTTCTTTCGGTTTTTGATTCTCAACCTTGAGCTATCGGTTATCTTATTTATGTGAGAAGC
TGCCGTTTGGATATTGATATAATTGTGTTCTGCCTGCCTCTTCACTTGTCATTGTTTTATGTTA
GTTATTCCTTTTTAGCAATGGGCAGTCAAATCTGCTGGTCTTGCCTGCATTTATTCTGAACTGG
AGCTGCCTTGGGCTCTTTACTCGCTAGATGAAGTTTGATCGCTTGCTTGTGTCATTCATTCAGT
TTGAGATTGACATCTTGCTTGCTCATTCATTATGTTGATAACAATGTGAAGCATGTAGTTCCTA
GTTTTGACAGATTTTGACATAGGGTTTCTATATAGTGATTTTGGCAGGAAATACGAGTCCATCA
CTATTTTCTAACTAAAGTTTACCGTCCAGCATGAGTTAGAACTCTTTGAATAAAATATTTTCAC
ACATTCTTGTTGATTGTCCAGCATGAGGATTGAAAAAGACTATAAAATCAAAAAAAAAAAAATT
CACACATTCCTGTCTTAGATTCTCCTGTTTGTCTTTACAACTGGTTTTGTAATGTTAACAATGC
ACACACCGCCTCCAAATCAATCTCAAATTTCACATATTACTGCCTCGAATGCTCCAATTTTCAC
CAATTCGTCTTTTAAATTGGTTTGTTACAACTAAGTAAGCCAAAGCGAGCGAATCTCACTTGGT
ACTTGGTAGCTCTTCATGAACTAATCTAAACGACAGCCACTTCGCAGCAACATTTCCGAAGCAG
ATTTTAGATTTTTAGTCAAAGTTAATGGGTTAATGGATTGACATCCAAACTAAGATAATAAAAA
TAAGCGGTACCGCAACTAGAAGGGAGTCACGGGAGCAGCGGCTTGCAGGAATCAGTTTATGAAC
AATGCAGGCATATCAAAATTTCATGTAGATCTATATGATCGGATTATGCCAACTTGCCAAGCAT
GAGTTCATGAGAATGCTAACACTACCCGCAACACCTTAAAAGTACTAATCCTCTAATATAACAA
CGAAGCATACTGAAATCTCGTCAGCATACTCATGCAAAATGTGAAGCAATGTCGCATCTCGTGA
TCATTTCTGCTGTATTGCAACGTACATATGCAGCCGTCATGTGTACTACCCACAATTCAGATAC
TCCCTCCGTCCCAAAATGTAACTATTTCTATTTCTAATACATTCTATTTCTAATACAGTGTCTT
GTCCCAAAATAAACCTATTTCTTCATCTACCTCCTCCTCTCAACCAATCACAACATTCTTCTTC
ACCTATTTTCTCTTTTCAACCAATCACACACTTCCTCCAATCATTCTCACCTACTTTCTTAATA
CCCGTACCAACCTCAAAAATAGCTTCATTTTGGGACGGAGGAAGTACATGGTAAGAGAGCAGAA
TAACTTCCAGCGTGGATCTAACTACTAAGTACTCTCTCCGTTTTAGGTTATAAGACGTTTTGAC
TTTAGTCAAAATCAAACTATTTTAAATTTGACTAAGTTTATAAACAAATATATTAATTTTATAA
TACTAAATTAGTTTTATCAAATCCAACATCTGACATAGAAGGGGTATAGACTAGAGAGCACACT
GATTGTCTCTCGCGCGTTCTTCTTGGTCACATTAACAAAAGACCTGAAGATACAAACATCGAGT
GAGTGAGTGACCAGACATAAGGACGGATGTATTACACAGTTCTGAAAGAACACATTTTGACTAG
AACAGTAATGTCAGGCTGGATAAGAATATAGCGTCAAGGGGCTAAACAGAGCTACTTGGAGGAG
CACGGAGCAGCAGCAAATTGAATACCCATAAGAATATATAAGATGATGTGATTATGGTACTGAA
CGGAATGAACACTAATTTACTTAATACATAATACATAAAACCACGGTCTGACCGATGAACTGGA
GGTCTAACCAGTGAACCGACAAGCTCACCGGGTTAGTCCTCGGTCTAACTTTTTCTACTATGGT
GGGGCGTGGTCGGCGGCACATGTCCTCGACGTCCCTGGCATCCCGACGGAGATGGACGCCGGCA
GACACAGAGTTGGCACGGGAGGATGCGGCACAGGGGTTGTTGACCGTGCGTCGCTGGTTCAACG
TTGATGGAGTTGGAACGCCGCTACCGCGACCTCCCCGAGCTTCGGCATCTCCCATCTTAAGCGA
GATCGGTAGTGTCGCCGCCTCACCTCCCCAAGCGCGCGCGTCGCTGGTCCAACGCGGACGGAGC
CGGAACACCGCCGCCGTGACTTCCGCCAGTCCTTCATTCAGCGCTTGTCTCGCTGGCGCCACGG
GAGATGTAAAAGATAATAGGGGAAGAGGAGAGTTGCTGACAAGTGGGACCCATAAGCTGACTCA
GCTAGTCAGCGGAATCAAAGCTGCCACGTAGGACAAAACCGTCTCCGAAACCGCGAGGGAGGTG
ATTTACTCTGGTTTTCAGAGAAGGAGGCGTTATACCCAGTTTTCCGGTTGAGGGATATTATTCA
CGCAAGCGTAACAGAAAAGGGACGCAAAACGGACTTATTCCAACGAGGAATCATCTCCTTTCCC
AGGCCCACAGACTGAGGCCCATCAAGCCGCGGAGAGCAACCCCTCAAGACGATCTGAGCCGTCC
GATCCATCTCCCGGACCGCATCCGTCCGCCCGATGCGCTCGCGCGACTCGGGTTTCTTCTTCGA
GTGGATGGATAAAAGGGCTCGAGGGCAGCCGCCGCTATAAACCCTAACTATTCCTTCTCCCACC
TCTCCCCTCTCCTCGCTCCTCCACGCGCCGCCGCCGCCGCAGCGGAGCAGCCACAGCAGGCGAG
CGACATG
Conservation Information
Conserved circRNAs osa_circ_005213
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021