Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G25220_circ_g.5 |
ID in PlantcircBase | ath_circ_040349 |
Alias | At_ciR4012 |
Organism | Arabidpsis thaliana |
Position | chr5: 8737164-8737557 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ, CIRI-full |
Parent gene | AT5G25220 |
Parent gene annotation |
KNAT3 |
Parent gene strand | + |
Alternative splicing | AT5G25220_circ_g.4 AT5G25220_circ_g.6 AT5G25220_circ_g.7 AT5G25220_circ_g.8 |
Support reads | 5/5 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G25220.2:2 AT5G25220.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.36764592 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8737230-8737554(+) |
Potential amino acid sequence |
MEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESER SLMERVRQELKHELKQTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGM GATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQTHYVLLLCSF KEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVL GFGPLIPTESERSLMERVRQELKHELKQTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSL QSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHEL KQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |