Detail information of Os02g0782200_circ_g.6


General Information
CircRNA Name Os02g0782200_circ_g.6
ID in PlantcircBase osa_circ_016814
Alias NA
Organism Oryza sativa
Position chr2: 33163137-33165196  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0782200
Parent gene annotation Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07822
00-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-0
2);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t07
82200-03)
Parent gene strand -
Alternative splicing Os02g0782200_circ_g.2 Os02g0782200_circ_g.3 Os02g0782200_circ_g.4 Os02g0782200_circ_g.5 Os02g0782200_circ_g.7 Os02g0782200_circ_g.8 Os02g0782200_circ_g.9 Os02g0782200_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0782200-02:3
Os02t0782200-01:3
Os02t0782200-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTATCCAGGTAAAGCCGGGAAGTCTTCATTTTGAATGCTGAATTCCTGGTTTTGCTGAACAA
TGGTGTTAACACCAACTCCTTGCTTCCGTAGGGAGCtgaattagcaccttgctggtgttgctga
cgatttggtgggtagttacttcctaagttaaagccaactgatcttgacatctgcgtaaatgtgc
aaatttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAATTAGCACCTTGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAGTTAAAGCCA
ACTGATCTTGACATCTGCGTAAATGTGCAAATTTGTCAAAAAAAAAAAGCACAGAAAAGAAGTT
ACTGAAAATTCAGAAACAGGGATGCACCGGATATTGTTGCGCTTGCATAACAGGTACATTATCA
TGAAGTTGTTCCTTGTGATGCAACTCCATAGCATAATCTGTAGTGTTGCCTGATAATTCAAAAG
GTTAATACTTTGCACAACTCAGCAAAGGGCAAAGAAAGGAATCTGTTATAGTAGCGAAATACGC
ACCAAAAGAGTAACTAAAGGAAAAGAAGTTTAAAACATGGTAAAGAATATCCAATGATCATGGA
ATAAACACAAGGCAAGTAACAGGTTTCGACCATCCAAAACACGTGCCAAGTAATAAATTCGAGA
CAGGAAATAGATTATGGCCAACCAAAATACGAGACACCGACAAAATATACCAAGAAGCCAACCA
AACATAAAAGCGGAAGGTTATTTTATAAGATGATTCACCAGCTAAGTTTAGAAACATTTTCAGC
ACACCAACAGACACAATAAAACAAAGCTGTGATGTTCAGTGCATCACAAAGCCGAGGAATTAAA
GGTGCCCATGTACTGCCAAATCGACAGCTATGGCACTAAACTCTTAGCACCAAATATGCATCAA
GCTTTTTAAGTGACTTTATCCGGGAACATCCCGGAATTAAATCCATGATATCCATAAACCAAAC
TCAAGCCACGTACTGTAAATATTGTTATATTTAGCTAGCCTAAACTATCTCAATTGACCATTGC
AAATTTCCGGCATGAGGAAAATTTGCAGGTCCTAATATTCTGCCAAAAAAAATTTAAAATATTG
TTTTCAGCATCATGAACCTTCCCAAATAAGTTTCATATTTTTTGGATTGCCTCAAGGCTTCAAT
CACAGATTCGCAGTTGCCTCAAACATGTGACTGACAAGGAGGCACATGGTGCAAAGATAAATTT
CCTAGATTCCGAAACTTTTGATCTATATTTGGTTGGCACAGGTACCTGGATCAAAATGGCCTGC
AGTTAGTTTTACTGCCATGACAGTAATAATTGTACATTTGCTGGGTTCAATTGGACTTGAACAT
CTTGTAATGGTTCAGCTGCTATACTTTCATTACACATTGCCTATTGGTTTAGTTCTCCGTATGA
CCATATGAATTGTCATAAAATAACACGATAGCCATGGGTTTGGCTACGCTGACAAAAACAATGA
ATATAACAAGAGGGTACCGAAAACTGTGTGAGTTGCGACAAGAAAACCACTTATTATCATCGTC
AAAAGTAAATCACTTGGATGTTAAAATCATGTATCCGACAATATATGCTACAAGTTCATGGCCA
GATTGAACGGCACTTGTTTTGGCAATGTAAACAGAGAGACAATGGGATTGCTAGGACTTCTGCA
CATGTCTGCAGACCGCAGGTTGAACAAGGACCATTTTGTCCAAGCAATGTGTTTGCGCATTTTC
ATCGTCGATCATCAAAATGATGATCTGTGGTAATCCCAATTGCTCCAATATCATAATTGGAGTA
GCCGGCATATAGTGGTGGCCCCATTCCTATGCTTAGTCTTAAATTAACCAAAGGTGGAAAAGCC
ACGGCAAGTATATGAACAGTACTAATACGTAATAACCACTCAGTAACTTGAGAAAAATGGTGTC
AGCCTTACATAAAAGATGAAATGTTAAAGCAAAACAGAGTTTGTAACAGAGAGTTGTATGACAG
GCTAGCAAAGGCCAGTTGAAAGTGCACTATTGTAGACAACAAATTGTAATAGCCATGGACAGTA
ACACTATTAAATAGATAGTGCACAATACACCAACACCAAGTATAATCAAGGCACCCTCACTGAA
TCAACAGATAGTTCTAGAAATAATATAGCTGTAACCACCTTTGTATCCAGGTAAAGCCGGGAAG
TCTTCATTTTGAATGCTGAATTCCTGGTTTTGCTGAACAATGGTGTTAACACCAACTCCTTGCT
TCCGTAGGGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.122495332
Functional Information
Coding potential Y
Potential coding position 33163359-33163189(-)
Potential amino acid sequence MELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGSNYPPNRQQHQQGANSAPYGSKELVLTPLFSK
TRNSAFKMKTSRLYLDTKATLQIMLWSCITRNNFMIMYLLCKRNNIRCQDQLALT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017