Detail information of Os10g0508400_circ_g.3


General Information
CircRNA Name Os10g0508400_circ_g.3
ID in PlantcircBase osa_circ_007607
Alias NA
Organism Oryza sativa
Position chr10: 19514967-19515484  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os10g0508400
Parent gene annotation Similar to Methionine aminopeptidase-like protein. (Os10t0508400
-01)
Parent gene strand +
Alternative splicing Os10g0508400_circ_g.4 Os10g0508400_circ_g.5 Os10g0508400_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0508400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGATTTGAACGAGACATATTTTGTTGGAAATGTTGATGAAGCTTCCAAGCAGCTTGTCCGTT
GTACCTATGAGTGCTTGGATAAAGCTATTGCAATAGgtggatatccatctccattgaattacca
tttcttcccgaagtcatgttgcacgtaggttgcctttaacttattgcttatttagaggcttaaa
ggaatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGATATCCATCTCCATTGAATTACCATTTCTTCCCGAAGTCATGTTGCACGTAGGTTGCCTT
TAACTTATTGCTTATTTAGAGGCTTAAAGGAATATGATATGCTCACATTGTTGTCGCTGGTATC
CAGGTCAGTCAATGAAGTCATCTGCCATGGAATTCCAGATGCCAGGTTCCCCTTCAATTTATAC
ATCAAGCTAATCTTTCAGTAGTGCTTTTGCTAACTTTGCTTTGCATTAGAAAGATTTAAGTTTT
TATCTGATCTTTCTCTAACAGGAAACTTGAAGATGGTGACATTGTAAATGTCGACGTAACTGTG
TATTACAAAGGAGTTCATGGTAAGTTCTCTGCAGCCTGGTATTGTATTTCGCTGCTGAAAGTTG
TTGGTTTTTTGACACAATATATAACTAAACTGCAGGTGATTTGAACGAGACATATTTTGTTGGA
AATGTTGATGAAGCTTCCAAGCAGCTTGTCCGTTGTACCTATGAGTGCTTGGATAAAGCTATTG
CAATAG
Conservation Information
Conserved circRNAs osi_circ_008592
PMCS 0.276078941
Functional Information
Coding potential Y
Potential coding position 19514997-19515101(-)
Potential amino acid sequence MVIQWRWISTYCNSFIQALIGTTDKLLGSFINISNKICLVQITMNSFVIHSYVDIYNVTIFKFP
GIWNSMADDFID*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017