Detail information of BGIOSGA033251_circ_g.1


General Information
CircRNA Name BGIOSGA033251_circ_g.1
ID in PlantcircBase osi_circ_008592
Alias Chr10:21354840_21355358(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18462985-18463506  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA033251
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033251-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGATTTGAACGAGACATATTTTGTTGGAAATGTTGATGAAGCTTCCAAGCAGCTTGTCCGTT
GTACCTATGAGTGCTTGGATAAAGCTATTGCAATAGggtggatatccatctccattgaattacc
atttcttcccgaagtcatgttgcacgtaggttgcctttaacttattgcttatttagaggctgta
aagggaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGATATCCATCTCCATTGAATTACCATTTCTTCCCGAAGTCATGTTGCACGTAGGTTGCCT
TTAACTTATTGCTTATTTAGAGGCTGTAAAGGGAATATGAAATGCTCACATTGTTGTCGCTGGT
ATCCAGGTCAGTCAATGAAGTCATCTGCCATGGAATTCCAGATGCCAGGTTCCCCCTTCAATTT
ATACATCAAGCTAATCTTTCAGTAGTGCTTTTGCTAACTTTGCTTTGCATTAGAAGGATTTAAG
TTTTTATCTGATCTTTCTCTAACAGGAAACTTGAAGATGGTGACATTGTAAATGTCGACGTAAC
TGTGTATTACAAAGGAGTTCATGGTAAGTTCTCTGCAGCCTGGTATTGTATTTCGCTGCTGAAA
GTTGTTGGTTTTTTGACACAATATATAACTAAACTGCAGGTGATTTGAACGAGACATATTTTGT
TGGAAATGTTGATGAAGCTTCCAAGCAGCTTGTCCGTTGTACCTATGAGTGCTTGGATAAAGCT
ATTGCAATAG
Conservation Information
Conserved circRNAs osa_circ_007607
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021