Detail information of Os10g0508400_circ_g.5


General Information
CircRNA Name Os10g0508400_circ_g.5
ID in PlantcircBase osa_circ_007609
Alias NA
Organism Oryza sativa
Position chr10: 19515485-19515589  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0508400
Parent gene annotation Similar to Methionine aminopeptidase-like protein. (Os10t0508400
-01)
Parent gene strand +
Alternative splicing Os10g0508400_circ_g.3 Os10g0508400_circ_g.4 Os10g0508400_circ_g.6
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TG-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGGTTATGTTTAAACTTCAAACATATGATTGCTCATTTATCTGAAGTTTCgtgattccttca
gtttcaatcttgtgttagtagcaatctaccttgctttatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATTCCTTCAGTTTCAATCTTGTGTTAGTAGCAATCTACCTTGCTTTATGCCTTGGTTATGT
TTAAACTTCAAACATATGATTGCTCATTTATCTGAAGTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.130952381
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017