Detail information of BGIOSGA031561_circ_g.1


General Information
CircRNA Name BGIOSGA031561_circ_g.1
ID in PlantcircBase osi_circ_008606
Alias Chr10:21622104_21622592(MH63RS2), Chr10:21622104_21622592(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18737897-18738385  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA031561
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031561_circ_g.2 BGIOSGA031561_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031561-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGAAGAA
GATGAGGATGAACGTCCCCACGAACTCCGCTCCAAGcccggcgatgaggatgttgagggtgacg
gcggcgccgacggcgatgccggcgagctcgccgacggcgcgggtgtcggtggcgacggcggtga
cgacgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCGGCGATGAGGATGTTGAGGGTGACGGCGGCGCCGACGGCGATGCCGGCGAGCTCGCCGACG
GCGCGGGTGTCGGTGGCGACGGCGGTGACGACGAAGAGGAGGTTGAAGGTGATGATGAACTCGG
TGAAGAAGGCCTGGGCGGTGGAGATGGTGGGGTCGGGGACGGTGACGCCGCCGGAGAGGAAGGG
GTGGAAGACGCCCTTGAGGGCGAAGCCGGCGCAGATGGAGCCGAGCACCTGGACGGCGACGTAC
GCCGGGACCTGCAGCCACGGGAAGTGGCGGAGCGCGGCGAAGGCGATGGTGAGCGACGGGTTGA
GGTGGGCGCCGGAGATGTGCCCCGTCGACAGGATGGTGGTCGTCACGGCGAGCCCCGCGCACGC
CGCGTTCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCG
AAGAAGATGAGGATGAACGTCCCCACGAACTCCGCTCCAAG
Conservation Information
Conserved circRNAs osa_circ_007661
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021