Detail information of BGIOSGA031561_circ_g.2


General Information
CircRNA Name BGIOSGA031561_circ_g.2
ID in PlantcircBase osi_circ_002906
Alias 10:18737898|18738385
Organism Oryza sativa ssp. indica
Position chr10: 18737898-18738385  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031561
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031561_circ_g.1 BGIOSGA031561_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031561-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGAAGAA
GATGAGGATGAACGTCCCCACGAACTCCGCTCCAAGccggcgatgaggatgttgagggtgacgg
cggcgccgacggcgatgccggcgagctcgccgacggcgcgggtgtcggtggcgacggcggtgac
gacgaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGCGATGAGGATGTTGAGGGTGACGGCGGCGCCGACGGCGATGCCGGCGAGCTCGCCGACGG
CGCGGGTGTCGGTGGCGACGGCGGTGACGACGAAGAGGAGGTTGAAGGTGATGATGAACTCGGT
GAAGAAGGCCTGGGCGGTGGAGATGGTGGGGTCGGGGACGGTGACGCCGCCGGAGAGGAAGGGG
TGGAAGACGCCCTTGAGGGCGAAGCCGGCGCAGATGGAGCCGAGCACCTGGACGGCGACGTACG
CCGGGACCTGCAGCCACGGGAAGTGGCGGAGCGCGGCGAAGGCGATGGTGAGCGACGGGTTGAG
GTGGGCGCCGGAGATGTGCCCCGTCGACAGGATGGTGGTCGTCACGGCGAGCCCCGCGCACGCC
GCGTTCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGA
AGAAGATGAGGATGAACGTCCCCACGAACTCCGCTCCAAG
Conservation Information
Conserved circRNAs osa_circ_007661*
PMCS
Functional Information
Coding potential Y
Potential coding position 18737905-18737904(+)
Potential amino acid sequence MRMLRVTAAPTAMPASSPTARVSVATAVTTKRRLKVMMNSVKKAWAVEMVGSGTVTPPERKGWK
TPLRAKPAQMEPSTWTATYAGTCSHGKWRSAAKAMVSDGLRWAPEMCPVDRMVVVTASPAHAAF
PNGEIAPPYFWFTIGAAVAKKMRMNVPTNSAPSRR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021