Detail information of Os10g0513200_circ_g.1


General Information
CircRNA Name Os10g0513200_circ_g.1
ID in PlantcircBase osa_circ_007661
Alias Os10circ07636
Organism Oryza sativa
Position chr10: 19779401-19779888  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, circseq_cup, find_circ
Parent gene Os10g0513200
Parent gene annotation Boric acid channel, Regulation of boron distribution (Os10t05132
00-01)
Parent gene strand -
Alternative splicing NA
Support reads 3/9/18
Tissues panicle/root/shoot, root, pistil
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os10t0513200-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGAAGAA
GATGAGGATGAACGTCCCCACGAACTCCGCTCCAAGccggcgatgaggatgttgagggtgacgg
cggcgccgacggcgatgccggcgagctcgccgacggcgcgggtgtcggtggcgacggcggtgac
gacgaaga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 488
Transcript exons: 19779401-19779888
CCGGCGATGAGGATGTTGAGGGTGACGGCGGCGCCGACGGCGATGCCGGCGAGCTCGCCGACGG
CGCGGGTGTCGGTGGCGACGGCGGTGACGACGAAGAGGAGGTTGAAGGTGATGATGAACTCGGT
GAAGAAGGCCTGGGCGGTGGAGATGGTGGGGTCGGGGACGGTGACGCCGCCGGAGAGGAAGGGG
TGGAAGACGCCCTTGAGGGCGAAGCCGGCGCAGATGGAGCCGAGCACCTGGACGGCGACGTACG
CCGGGACCTGCAGCCACGGGAAGTGGCGGAGCGCGGCGAAGGCGATGGTGAGCGACGGGTTGAG
GTGGGCGCCGGAGATGTGCCCCGTCGACAGGATGATGGTCGTCACGGCGAGCCCCGCGCACGCC
GCGTTCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGA
AGAAGATGAGGATGAACGTCCCCACGAACTCCGCTCCAAG

Transcript length: 488
Transcript exons: 19779401-19779888
CCGGCGATGAGGATGTTGAGGGTGACGGCGGCGCCGACGGCGATGCCGGCGAGCTCGCCGACGG
CGCGGGTGTCGGTGGCGACGGCGGTGACGACGAAGAGGAGGTTGAAGGTGATGATGAACTCGGT
GAAGAAGGCCTGGGCGGTGGAGATGGTGGGGTCGGGGACGGTGACGCCGCCGGAGAGGAAGGGG
TGGAAGACGCCCTTGAGGGCGAAGCCGGCGCAGATGGAGCCGAGCACCTGGACGGCGACGTACG
CCGGGACCTGCAGCCACGGAAAGTGGCGGAGCGCGGCGAAGGCGATGGTGAGCGACGGGTTGAG
GTGGGCGCCGGAGATGTGCCCCGTCGACAGGATGATGGTCGTCACGGCGAGCCCCGCGCACGCC
GCGTTCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGA
AGAAGATGAGGATGAACGTCCCCACGAACTCCGCTCCAAG

Genomic sequence CCGGCGATGAGGATGTTGAGGGTGACGGCGGCGCCGACGGCGATGCCGGCGAGCTCGCCGACGG
CGCGGGTGTCGGTGGCGACGGCGGTGACGACGAAGAGGAGGTTGAAGGTGATGATGAACTCGGT
GAAGAAGGCCTGGGCGGTGGAGATGGTGGGGTCGGGGACGGTGACGCCGCCGGAGAGGAAGGGG
TGGAAGACGCCCTTGAGGGCGAAGCCGGCGCAGATGGAGCCGAGCACCTGGACGGCGACGTACG
CCGGGACCTGCAGCCACGGGAAGTGGCGGAGCGCGGCGAAGGCGATGGTGAGCGACGGGTTGAG
GTGGGCGCCGGAGATGTGCCCCGTCGACAGGATGATGGTCGTCACGGCGAGCCCCGCGCACGCC
GCGTTCCCGAACGGCGAGATCGCGCCGCCGTACTTCTGGTTCACGATCGGCGCCGCCGTCGCGA
AGAAGATGAGGATGAACGTCCCCACGAACTCCGCTCCAAG
Conservation Information
Conserved circRNAs osi_circ_002906* osi_circ_008606
PMCS 0.349305618
Functional Information
Coding potential Y
Potential coding position 19779408-19779407(+)
Potential amino acid sequence MRMLRVTAAPTAMPASSPTARVSVATAVTTKRRLKVMMNSVKKAWAVEMVGSGTVTPPERKGWK
TPLRAKPAQMEPSTWTATYAGTCSHGKWRSAAKAMVSDGLRWAPEMCPVDRMMVVTASPAHAAF
PNGEIAPPYFWFTIGAAVAKKMRMNVPTNSAPSRR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA