Detail information of Os01g0934200_circ_g.3


General Information
CircRNA Name Os01g0934200_circ_g.3
ID in PlantcircBase osa_circ_005692
Alias NA
Organism Oryza sativa
Position chr1: 40980320-40981933  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0934200
Parent gene annotation Mitochondrial carrier protein domain containing protein. (Os01t0
934200-01)
Parent gene strand +
Alternative splicing Os01g0934200_circ_g.2 Os01g0934200_circ_g.4 Os01g0934200_circ_g.5 Os01g0934200_circ_g.6 Os01g0934200_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0934200-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCT
TGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGggattttggagaggaaatgttccagccc
tattaatgtatatgccatatacagctatacaattcactgttctacacaagctgaaaacatttgc
ttctggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTATATGCCATATACAGCTATACAATTCA
CTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCATCCAAAACAGGTACATTTTCTCTTTA
TGGTATCTGTTCCAACTTGGTCCATTGTTCTAGACTGAAGTATGAATTACAGTGGTCACTCCTC
AAACCTTAATTTTTAGTGTGTACAAAAGTTATGAGGTTTGCCCAGAACTTTGAGCTTTGTATTG
TCTCTATAGTCCTTACCTGATCTGTGTTATTTGCCCAGAGGATCATTTGCACTTGAGTCCTTAC
CTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCAACAGTAGGATCATATCCATTTGACC
TTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGGTAAATATGTACTCTGCGGTTGTAGA
CACCTTTTTTTTTTTGTTTCATTGAGGTATTAACATGATCTCTGGTCATATATTCTCACTTTAT
TAGCTCCTAATAGCATGGATGTGATACTTGTTCATAATGACTGAATCGTCATCTTCAGTATACA
TACATAACATAGTATGCAAAGGACTTCCTGGCACCTTTTTTGTTTTCTCAATCGTTTCTCTTCA
TTCCCTGATTCGTGTAGTTTTGTCAACATTGCACACCACACTACATAGGAGCAGTTTAAGGTTG
AGGTCTTTTTGGCTGGAAATCTAGTTTTCTTTGCAGAACTTAAAACAACACTGATTCATATTGT
TGTTTGAAAAACATGAATTTTTCCTTTTTTATTATTGGATTTTATTATGCAAATGATTATTTTG
TGCTGAACTTTTCCACTATCATGTATTTATTCAGCATATAGAGTACTGGAATATCATGGCACAA
AATTGTATTCACATGCAGTTATGTTTATCTGTAGGTTTACCCTGACATGAGGTCTGCATTTCTT
GATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCCGGTCTAACTCCAACTCTTGTTGAAA
TCATACCATATGCTGGCTTACAGTTTGGTTCATATGATACTTTCAAACGGTCGATGATGGTAAC
AATACTAATATCTCTTTTTTGGCATGTGCTTAATTAGACTATTTTGAGGTGATTTATGCCATTT
TAGATATTGTAGCTTAGCCTCAACTTTATTTGTCTCCAAGTCTGATCATATTTACACTTTTCTT
GAGAATGATGACACTGAAGTATTGAGATTAAGGAAAGGTAGTGAATCTATATATCTTTCAAACA
AGTGAAGACCTAAAAATCTAACGACGCTTAAATAAGCAATCTGTAATTACTAGTTATGTGGAAC
AATCTTAATGCTTGATAAGAAAAAAATTATCTTTGACACTTAGAAACTTTTTATTGCTGTGGGA
TTCCGTGAATGCTGTTAATGCTTGAACCATCTGACTTTATTTTTTTTTCAATGTAGACATGGAA
TAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGATGATTCAGTATCAAGCTTCCAGTTA
TTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCTTGTCACCCACTTGATGTTGTAA
AGAAAAGATTTCAG
Conservation Information
Conserved circRNAs zma_circ_007686
PMCS 0.126398942
Functional Information
Coding potential Y
Potential coding position 40980354-40981930(+)
40980367-40981814(-)
Potential amino acid sequence MYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILAS
QGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYS
HLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFT
VLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYPDMR
SAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSEDDSV
SSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASG
SSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRG
FRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFA
AGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLS
PYLSYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPT
LVEIIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHP
LDVVKKRFQ(+)
MAYTLIGLEHFLSKIPEIFSLQHQVGDKQLLKMFRLQIHKEITGSLILNHPHFLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017