Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0934200_circ_g.2 |
ID in PlantcircBase | osa_circ_005691 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 40979527-40981933 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0934200 |
Parent gene annotation |
Mitochondrial carrier protein domain containing protein. (Os01t0 934200-01) |
Parent gene strand | + |
Alternative splicing | Os01g0934200_circ_g.3 Os01g0934200_circ_g.4 Os01g0934200_circ_g.5 Os01g0934200_circ_g.6 Os01g0934200_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0934200-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.113528566 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
40980354-40981930(+) 40980367-40981814(-) |
Potential amino acid sequence |
MYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILAS QGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYS HLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQVQLEPTTSWGVLRRDVYGPSKY TGLLQASKDILREEGLPGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYL SYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVE IIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDV VKKRFQVQLEPTTSWGVLRRDVYGPSKYTGLLQASKDILREEGLPGFWRGNVPALLMYMPYTAI QFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYP DMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSED DSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQVQLEPTTSWGVLRRDVYGPSKYTGLLQASK DILREEGLPGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIA GCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQ FGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQ(+ ) MAYTLIGLEHFLSKIPANLPLGEYLYLLAKAQCTWKVHRHPFEVHPTRLWAPIEPEIFSLQHQV GDKQLLKMFRLQIHKEITGSLILNHPHFLS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |