Detail information of Os01g0934200_circ_g.2


General Information
CircRNA Name Os01g0934200_circ_g.2
ID in PlantcircBase osa_circ_005691
Alias NA
Organism Oryza sativa
Position chr1: 40979527-40981933  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0934200
Parent gene annotation Mitochondrial carrier protein domain containing protein. (Os01t0
934200-01)
Parent gene strand +
Alternative splicing Os01g0934200_circ_g.3 Os01g0934200_circ_g.4 Os01g0934200_circ_g.5 Os01g0934200_circ_g.6 Os01g0934200_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0934200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCTGCT
TGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAGgttcaattggagcccacaacctcgtggg
gtgtacttcgaagggatgtctatggaccttccaagtacactgggcttttgcaagcaagtaaaga
tattctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCAATTGGAGCCCACAACCTCGTGGGGTGTACTTCGAAGGGATGTCTATGGACCTTCCAAGT
ACACTGGGCTTTTGCAAGCAAGTAAAGATATTCTCCGAGAGGAAGGTTTGCCGGTATCTCCTTT
TCTTTGAACATTTCTCTGTTCATGTGCTGTTTACTAGTGACATATGCATGTGCTGCTGCTTATT
AACTTGCATGCCTGAGTGGGATCACTCATCCAAATATCAGTTTTAATATCATTTTATTATGCTG
AACATGGACCAAATGCAAAAGCAGGGCGGGCTTATGGATTTCACTTCTGCTGCTAATTCTGCTA
ACTTTATTGAGTAACATTGATTTGGTGACATCTAGCATGTATCAAAGGCTACTCAGCCACACGT
TGCACTGTCTCTTCCTGTCATATAACTTATGGTGATGCATTAAAACAAAACCCATTAATTTGAT
CTACTCCTGGTTCAGTTCAAATGAAAATGGAAGGCACCAAGCTGCAAGATATACTACTCTGACA
CTATTCTCCAAAAAAGTACCACATGTGTTTTTATGGCTGAAATAGAGGCTTGAAGTTTACTTGT
TAGGTGATATTGGCTGCTGGTTTTGAAATACATTTTTTCCTGCAATGTATTGGGAATCACAGTG
TGTGTTGCCTTTATTTTTTGCCCTAGATCTGTATACTTTGTTAATCTATGTGTGATTTGTTCTT
ATTTTCTGTTTGTTTTAAATGTCATATCTTAAACAAAAAGAATTATTCATTAAGAAAAGTCGTC
ACCATGCAAAATTCTGATCTTTCAGGGATTTTGGAGAGGAAATGTTCCAGCCCTATTAATGTAT
ATGCCATATACAGCTATACAATTCACTGTTCTACACAAGCTGAAAACATTTGCTTCTGGTTCAT
CCAAAACAGGTACATTTTCTCTTTATGGTATCTGTTCCAACTTGGTCCATTGTTCTAGACTGAA
GTATGAATTACAGTGGTCACTCCTCAAACCTTAATTTTTAGTGTGTACAAAAGTTATGAGGTTT
GCCCAGAACTTTGAGCTTTGTATTGTCTCTATAGTCCTTACCTGATCTGTGTTATTTGCCCAGA
GGATCATTTGCACTTGAGTCCTTACCTATCGTATGTAAGTGGGGCTATAGCAGGATGTGCAGCA
ACAGTAGGATCATATCCATTTGACCTTCTCAGAACAATTCTTGCATCACAGGGTGAACCGAAGG
TAAATATGTACTCTGCGGTTGTAGACACCTTTTTTTTTTTGTTTCATTGAGGTATTAACATGAT
CTCTGGTCATATATTCTCACTTTATTAGCTCCTAATAGCATGGATGTGATACTTGTTCATAATG
ACTGAATCGTCATCTTCAGTATACATACATAACATAGTATGCAAAGGACTTCCTGGCACCTTTT
TTGTTTTCTCAATCGTTTCTCTTCATTCCCTGATTCGTGTAGTTTTGTCAACATTGCACACCAC
ACTACATAGGAGCAGTTTAAGGTTGAGGTCTTTTTGGCTGGAAATCTAGTTTTCTTTGCAGAAC
TTAAAACAACACTGATTCATATTGTTGTTTGAAAAACATGAATTTTTCCTTTTTTATTATTGGA
TTTTATTATGCAAATGATTATTTTGTGCTGAACTTTTCCACTATCATGTATTTATTCAGCATAT
AGAGTACTGGAATATCATGGCACAAAATTGTATTCACATGCAGTTATGTTTATCTGTAGGTTTA
CCCTGACATGAGGTCTGCATTTCTTGATATAATGAAAACCCGCGGTTTCCGAGGACTTTACGCC
GGTCTAACTCCAACTCTTGTTGAAATCATACCATATGCTGGCTTACAGTTTGGTTCATATGATA
CTTTCAAACGGTCGATGATGGTAACAATACTAATATCTCTTTTTTGGCATGTGCTTAATTAGAC
TATTTTGAGGTGATTTATGCCATTTTAGATATTGTAGCTTAGCCTCAACTTTATTTGTCTCCAA
GTCTGATCATATTTACACTTTTCTTGAGAATGATGACACTGAAGTATTGAGATTAAGGAAAGGT
AGTGAATCTATATATCTTTCAAACAAGTGAAGACCTAAAAATCTAACGACGCTTAAATAAGCAA
TCTGTAATTACTAGTTATGTGGAACAATCTTAATGCTTGATAAGAAAAAAATTATCTTTGACAC
TTAGAAACTTTTTATTGCTGTGGGATTCCGTGAATGCTGTTAATGCTTGAACCATCTGACTTTA
TTTTTTTTTCAATGTAGACATGGAATAGGTACCGATATTCACATCTTAACTCAGGAAGTGAGGA
TGATTCAGTATCAAGCTTCCAGTTATTTCTTTGTGGATTTGCAGCCGGAACATTTTCAAAAGCT
GCTTGTCACCCACTTGATGTTGTAAAGAAAAGATTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.113528566
Functional Information
Coding potential Y
Potential coding position 40980354-40981930(+)
40980367-40981814(-)
Potential amino acid sequence MYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILAS
QGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYS
HLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQVQLEPTTSWGVLRRDVYGPSKY
TGLLQASKDILREEGLPGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYL
SYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVE
IIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDV
VKKRFQVQLEPTTSWGVLRRDVYGPSKYTGLLQASKDILREEGLPGFWRGNVPALLMYMPYTAI
QFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIAGCAATVGSYPFDLLRTILASQGEPKVYP
DMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYRYSHLNSGSED
DSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQVQLEPTTSWGVLRRDVYGPSKYTGLLQASK
DILREEGLPGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGAIA
GCAATVGSYPFDLLRTILASQGEPKVYPDMRSAFLDIMKTRGFRGLYAGLTPTLVEIIPYAGLQ
FGSYDTFKRSMMTWNRYRYSHLNSGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQ(+
)
MAYTLIGLEHFLSKIPANLPLGEYLYLLAKAQCTWKVHRHPFEVHPTRLWAPIEPEIFSLQHQV
GDKQLLKMFRLQIHKEITGSLILNHPHFLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017