Detail information of Os01g0934200_circ_g.6


General Information
CircRNA Name Os01g0934200_circ_g.6
ID in PlantcircBase osa_circ_005695
Alias NA
Organism Oryza sativa
Position chr1: 40981403-40981703  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0934200
Parent gene annotation Mitochondrial carrier protein domain containing protein. (Os01t0
934200-01)
Parent gene strand +
Alternative splicing Os01g0934200_circ_g.2 Os01g0934200_circ_g.3 Os01g0934200_circ_g.4 Os01g0934200_circ_g.5 Os01g0934200_circ_g.7
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TA-TG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGACCTAAAAATCTAACGACGCTTAAATAAGCAATCTGTAATTACTAGTTATGTGGAACAATC
TTAATGCTTGATAAGAAAAAAATTATCTTTGACACTgtaacaatactaatatctcttttttggc
atgtgcttaattagactattttgaggtgatttatgccattttagatattgtagcttagcctcaa
ctttattt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAACAATACTAATATCTCTTTTTTGGCATGTGCTTAATTAGACTATTTTGAGGTGATTTATGC
CATTTTAGATATTGTAGCTTAGCCTCAACTTTATTTGTCTCCAAGTCTGATCATATTTACACTT
TTCTTGAGAATGATGACACTGAAGTATTGAGATTAAGGAAAGGTAGTGAATCTATATATCTTTC
AAACAAGTGAAGACCTAAAAATCTAACGACGCTTAAATAAGCAATCTGTAATTACTAGTTATGT
GGAACAATCTTAATGCTTGATAAGAAAAAAATTATCTTTGACACT
Conservation Information
Conserved circRNAs NA
PMCS 0.136777187
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017