Detail information of Zm00001d042213_circ_g.1


General Information
CircRNA Name Zm00001d042213_circ_g.1
ID in PlantcircBase zma_circ_007686
Alias zma_circ_0001202, GRMZM2G124911_C1
Organism Zea mays
Position chr3: 156294605-156296841  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d042213
Parent gene annotation thiamine diphosphate carrier protein2
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d042213_T002:4
Zm00001d042213_T001:4
Zm00001d042213_T003:4
Zm00001d042213_T005:4
Zm00001d042213_T004:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCAGAAGCAAATGTTTTTAGTTTGTGTAGGACAGTGAATTGTATAGCTGTATATGGCATATA
CATCAACAAAGCCGGTACATTTCCTCTCCAGAATCCctggaaccttttctttacaacatcaagt
gggtggcatgcagcctttgaaaatgtcccagcagcaaacccacaaagaaatagctggaaacttg
atacagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 543
Transcript exons: 156294605-156294754,156294905-156295057,156295564-156295
691,156296730-156296841
CTGGAACCTTTTCTTTACAACATCAAGTGGGTGGCATGCAGCCTTTGAAAATGTCCCAGCAGCA
AACCCACAAAGAAATAGCTGGAAACTTGATACAGAATCATCCTCGCTTCCAAAGTTAAGATGCG
AATATTTATATCTGTTCCATGTCATCATAGAACGTTTGAAAGTGTCATATGAACCAAACTGCAA
ACCAGCATATGGTATGATTTCAACAAGAGTTGGAGATAGACCAGAATAAAGCCCTTGAACACCA
CGGGTTTTAATTATATCAACAAATGCAGACCTCATGTTGGGGTAAATTTTTGGTTCACCCTGTG
ATGCAAGAATAGTCCTCAGAAGGTCAAATGGATATGACCCTATAGTTGCTGCACATCCTGCTAG
AGCTCCACTTACATAGGATAAGTAAGGGCTCAAATGCAAATGATCCTCTGTTTTAGATGAACCA
GAAGCAAATGTTTTTAGTTTGTGTAGGACAGTGAATTGTATAGCTGTATATGGCATATACATCA
ACAAAGCCGGTACATTTCCTCTCCAGAATCC

Genomic sequence CTGGAACCTTTTCTTTACAACATCAAGTGGGTGGCATGCAGCCTTTGAAAATGTCCCAGCAGCA
AACCCACAAAGAAATAGCTGGAAACTTGATACAGAATCATCCTCGCTTCCAAAGTTAAGATGCG
AATATTTATATCTGTTCCATGTCTGCATGGCAGAAAATACAGTCAGGGAGATCAAATTTCACCA
GTATTCATAAAAGTATTTGGTATCCTTGACAAGCATGTATTCGACATAGAAGCAATTCTACTTA
TATAAGTATGCAATAGGCAAAAACTGTGAGTTTAATGTCATTACCATCATAGAACGTTTGAAAG
TGTCATATGAACCAAACTGCAAACCAGCATATGGTATGATTTCAACAAGAGTTGGAGATAGACC
AGAATAAAGCCCTTGAACACCACGGGTTTTAATTATATCAACAAATGCAGACCTCATGTTGGGG
TAAATCTACAGAGAAAAACTCTGAATCAGCAAACCCTGTGTGGCACCATAAGTGCAAAAAAGAG
TGCCAAAAACATTGAAATGAAATAGTAGAAGAAAATCCCAACAAATAATTGCATGCATAATGGC
ACCCATTAATAAGGAGCAAAATAATACAGACTATTTTCACATATTTGCAGTGTTGGGACAAAAA
ATTCTCCCAGGATTAGGAACAACATCAGCCTATTAAATCATCAGACCTGTAAGAATATGAGCAG
TTCCAAAACCAAGCTAATAGAGTCATAACCAAAGAACAACAACAACAAAGCCTTTTTGTCCCAA
GCAAGTTAGGGTAGGCTAGAGTTAAACCCCAACATAAACCAAGTCAAGGTCCTGCTGAAAAAAC
CCCACAAAGACACACTTGCTTCTAACCCTAAAGTCCCCATCATTCCATTCAATTACACACAACT
AAACATGCCACAAGTGTTAAAAAAATTAATTGTTTTGTAGACCAAAGGTAAAATCAGACTTACT
TTTGGTTCACCCTGTGATGCAAGAATAGTCCTCAGAAGGTCAAATGGATATGACCCTATAGTTG
CTGCACATCCTGCTAGAGCTCCACTTACATAGGATAAGTAAGGGCTCAAATGCAAATGATCCTC
TGAGAGAGAAAAATACCAATAGATCAGATAAGATTTTAGAGATGTATATACTCATAATGGTGGA
AGGACAGTTCTGGCGCAGTGGTGAGAAGTTATTCCACTGAGCCAAAGGTCCTAGGTTCGACGTA
ACTTCTCTACAAAAATGTAGGGGTAAGGTTTGTCTCGGTTATTCCTTCCCCAGACCTGACTCAT
GTGGGAGCCACCACACTGTGTCTGTCCTTTTTTATATACTCATAATAGTGCTTCAGTTTTGATT
TTTGAACAATATATATGATTTTTGGCAGTGAGATGAGTTACAGCAGCTAACTAACTTTGAAGGT
GACATATTAAAGAGGCATCAGTTATAAAGAGACAAGATTGAGAAAATTTCAAATCATTCAACTA
ACACCAAATTGTGTGAACCACTAATCTGAACTACCGACATTTAAGTTAAAATAGGTTATGATCA
TGACATTGTCAACTTCTGTAATGGAATCGACCACATCAAAACACTATTACGTAAGTCAGCAATT
TGATACATGAGCCCACAACTCCAAAGTTAGTTTGTGTACTACAAAATAATCCATGGTTTAATCA
TAAATAAATGAATAAATCACCAAAGCTTCCAAAATGTGGAATATGAGACAATCCTAGAGAATGC
CACGAGATAACTGAGAAAAATTCAAGTCTTGATGAAACTGCAACTACTGTTTTATTGGAAGAAA
AATAAAAAATTGAAAATGGATTCCTGAGAACACCTAGAATGAAAAAATGGCATATTCATTGGAA
CTGAAGTCATGGAAGCAACTGAATGTCGAAGGAGCACCATGGTCAAGCTTAGGTGTACTCTTTT
TTTTATGGTGGCACATGTTTGGACTCTTGTTATGATGCACAGGTAATAAGATTTAGAATTGTTT
TGGCATTTTGCCCAGAATGCAGTCACTAAAATAAATGAAAACTACTGCGAACCTTATCATTAAG
GTTTACAGAATGATTGTTGCACTAGTACAAAAAAAAACAAAAAGAAGTTGCAAGGGTGCCTTAT
GCATACAAGATACCTGTTTTAGATGAACCAGAAGCAAATGTTTTTAGTTTGTGTAGGACAGTGA
ATTGTATAGCTGTATATGGCATATACATCAACAAAGCCGGTACATTTCCTCTCCAGAATCC
Conservation Information
Conserved circRNAs osa_circ_005692
PMCS 0.095562992
Functional Information
Coding potential Y
Potential coding position 156296797-156294723(+)
156296810-156294607(-)
Potential amino acid sequence MAYTSTKPVHFLSRIPGTFSLQHQVGGMQPLKMSQQQTHKEIAGNLIQNHPRFQS*(+)
MYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILAS
QGEPKIYPNMRSAFVDIIKTRGVQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYS
HLNFGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFT
VLHKLKTFASGSSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMR
SAFVDIIKTRGVQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSV
SSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASG
SSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMRSAFVDIIKTRG
VQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSVSSFQLFLCGFA
AGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLS
PYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMRSAFVDIIKTRGVQGLYSGLSPT
LVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSVSSFQLFLCGFAAGTFSKAACHP
LDVVKKRFQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019