Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d042213_circ_g.1 |
ID in PlantcircBase | zma_circ_007686 |
Alias | zma_circ_0001202, GRMZM2G124911_C1 |
Organism | Zea mays |
Position | chr3: 156294605-156296841 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d042213 |
Parent gene annotation |
thiamine diphosphate carrier protein2 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d042213_T002:4 Zm00001d042213_T001:4 Zm00001d042213_T003:4 Zm00001d042213_T005:4 Zm00001d042213_T004:4 |
Conservation Information | |
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Conserved circRNAs | osa_circ_005692 |
PMCS | 0.095562992 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
156296797-156294723(+) 156296810-156294607(-) |
Potential amino acid sequence |
MAYTSTKPVHFLSRIPGTFSLQHQVGGMQPLKMSQQQTHKEIAGNLIQNHPRFQS*(+) MYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILAS QGEPKIYPNMRSAFVDIIKTRGVQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYS HLNFGSEDDSVSSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFT VLHKLKTFASGSSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMR SAFVDIIKTRGVQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSV SSFQLFLCGFAAGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASG SSKTEDHLHLSPYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMRSAFVDIIKTRG VQGLYSGLSPTLVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSVSSFQLFLCGFA AGTFSKAACHPLDVVKKRFQGFWRGNVPALLMYMPYTAIQFTVLHKLKTFASGSSKTEDHLHLS PYLSYVSGALAGCAATIGSYPFDLLRTILASQGEPKIYPNMRSAFVDIIKTRGVQGLYSGLSPT LVEIIPYAGLQFGSYDTFKRSMMTWNRYKYSHLNFGSEDDSVSSFQLFLCGFAAGTFSKAACHP LDVVKKRFQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |