Detail information of AT2G06990_circ_g.1


General Information
CircRNA Name AT2G06990_circ_g.1
ID in PlantcircBase ath_circ_012985
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2898532-2900027  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.5 AT2G06990_circ_g.6 AT2G06990_circ_g.7 AT2G06990_circ_g.8
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06990.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTG
CAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGgttcctgttcagctacccttaatttctg
ctttgagcagactaaggatatcagttccttctgatcttcggccagtggaagcaagacagagtat
actacttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCCTGTTCAGCTACCCTTAATTTCTGCTTTGAGCAGACTAAGGATATCAGTTCCTTCTGATC
TTCGGCCAGTGGAAGCAAGACAGAGTATACTACTTGCATTACAGGAGTTGTCAAGTCGCTTCCC
TCTAGGGTTCCCAAAACTCCATCCAGTCAAGGTTTCTTTTTAAGCTGTTAAAGTAGTGCTATCT
TCGATGAAAGGCTTTACACAATCTTTTAACTTACTGCCAATATGCATAAATCATATGCTTGTTG
ATTTTTTGTTGTCTAAAATGACTGAAATGCCTTCCTTTTGTCTAAAATGACAGTGTATATGGAC
TCATCGATGTCGTATTGCTTACTGTGTTTTATGCTAGGCTTTAATTTTTGAAGTAATAAATTAG
TAGAAGATGGCATTCAGGTTTCATTGGTTTTATAATAATCTACAGGATATGAATATTCAAGACA
CAGAGATAGTGGATCTGGTCAGCCAAATCGAAGAAGTTGAGCAGAAGTTACTTGCTCATCCGAT
GCACAAGGTCGTGCTAAATGTAGTATTTCTTTGAGCTTCTGAACTTAAAGAAAAGAAGACAAAA
TATTGTGAAAGCATATTAAGAACTTAAACAATATATTAATATTTCTATTGTCTCATTTTTTATG
TGTTGCAGTCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGAAAGCGGAGGTGAATTATGA
AATTCAACAGCTAAAATCGAAAATGCGTGATTCCCAGGTATATTACTTACTCTCTCACCCATGA
GTAAATGATGCATGGAATCCTTTATTATGTGTGTCCTATCTGCAAGGAATATCTCCTTTCCAGT
AGGGTTGTTACTTGGCATGATAAATTCTGCTTGTATCCAATTTGTACTGCTTTCGATTTTCCTA
TACTTTTTTCCCGTTTAGCTACGTATAGACTAAAACAATATAATAGGGAGACGAACTTTTACGT
TTAAAAGCAAACAAATTGTAGAATGTTCATTGATTACTAGACTCACTGCTAGAGTTTAAGATTT
CTTTTCATCCCTCTTGTGTCTTACAGCATATTTTTTTTTTTTATCTCTGCAGCTCCAAAAGTTT
CGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGACACATTGATGCTGATGGTG
TCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGGATGAATTGCTTGTCACTGA
ACTGATGTTTAATGGTATGACAACTGCTTTAGCTACACAGTTCTAAGTGTAGGCCTTTTAGGTG
ACTGAGGCAGTGTATAATGGTTGTATCACACTATATATAATTGCGTTGTGTGTTCCTTACCTAC
CAGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTGCAAGCTGTTTCATTCCTGT
TGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTGCAGCAGCTCCAA
GATAGTGCACGGAAAATAGCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.141206813
Functional Information
Coding potential Y
Potential coding position 2898964-2900024(+)
Potential amino acid sequence MNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKF
RDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC
FIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEVPVQLPLISALSRLRISVPSDLRPVEARQSI
LLALQELSSRFPLGFPKLHPVKDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQR
KAEVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLV
TELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEVPVQLPLI
SALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNIQDTEIVDLVSQIEEV
EQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHID
ADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELT
KPLQQLQDSARKIAEVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKL
HPVKDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDS
QLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017