Detail information of AT2G06990_circ_g.2


General Information
CircRNA Name AT2G06990_circ_g.2
ID in PlantcircBase ath_circ_012986
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2898691-2898932  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.1 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.5 AT2G06990_circ_g.6 AT2G06990_circ_g.7 AT2G06990_circ_g.8
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGACAGTGTATATGGACTCATCGATGTCGTATTGCTTACTGTGTTTTATGCTAGGCTTTAAT
TTTTGAAGTAATAAATTAGTAGAAGATGGCATTCAGgtttctttttaagctgttaaagtagtgc
tatcttcgatgaaaggctttacacaatcttttaacttactgccaatatgcataaatcatatgct
tgttgatt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 242
Transcript exons: 2898691-2898932
GTTTCTTTTTAAGCTGTTAAAGTAGTGCTATCTTCGATGAAAGGCTTTACACAATCTTTTAACT
TACTGCCAATATGCATAAATCATATGCTTGTTGATTTTTTGTTGTCTAAAATGACTGAAATGCC
TTCCTTTTGTCTAAAATGACAGTGTATATGGACTCATCGATGTCGTATTGCTTACTGTGTTTTA
TGCTAGGCTTTAATTTTTGAAGTAATAAATTAGTAGAAGATGGCATTCAG

Genomic sequence GTTTCTTTTTAAGCTGTTAAAGTAGTGCTATCTTCGATGAAAGGCTTTACACAATCTTTTAACT
TACTGCCAATATGCATAAATCATATGCTTGTTGATTTTTTGTTGTCTAAAATGACTGAAATGCC
TTCCTTTTGTCTAAAATGACAGTGTATATGGACTCATCGATGTCGTATTGCTTACTGTGTTTTA
TGCTAGGCTTTAATTTTTGAAGTAATAAATTAGTAGAAGATGGCATTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.259807163
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017