Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G06990_circ_g.5 |
ID in PlantcircBase | ath_circ_012989 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 2898961-2900208 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, PcircRNA_finder |
Parent gene | AT2G06990 |
Parent gene annotation |
DExH-box ATP-dependent RNA helicase DExH10 |
Parent gene strand | + |
Alternative splicing | AT2G06990_circ_g.1 AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.4 AT2G06990_circ_g.6 AT2G06990_circ_g.7 AT2G06990_circ_g.8 |
Support reads | 16 |
Tissues | root, inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G06990.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.221991264 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2898964-2900205(+) |
Potential amino acid sequence |
MNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKF RDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC FIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPFLMDVIYSWS KDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQ KFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALA SCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPFLMDVIYS WSKDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQ LQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA LASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPFLMDVI YSWSKDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRD SQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV AALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPFLMD VIYSWSK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |