Detail information of AT2G06990_circ_g.4


General Information
CircRNA Name AT2G06990_circ_g.4
ID in PlantcircBase ath_circ_012988
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2898961-2900027  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G06990
Parent gene annotation DExH-box ATP-dependent RNA helicase DExH10
Parent gene strand +
Alternative splicing AT2G06990_circ_g.1 AT2G06990_circ_g.2 AT2G06990_circ_g.3 AT2G06990_circ_g.5 AT2G06990_circ_g.6 AT2G06990_circ_g.7 AT2G06990_circ_g.8
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06990.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCATTG
CAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAGgatatgaatattcaagacacagagatag
tggatctggtcagccaaatcgaagaagttgagcagaagttacttgctcatccgatgcacaaggt
cgtgctaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 486
Transcript exons: 2898961-2899050,2899180-2899272,2899608-2899761,2899879-
2900027
GATATGAATATTCAAGACACAGAGATAGTGGATCTGGTCAGCCAAATCGAAGAAGTTGAGCAGA
AGTTACTTGCTCATCCGATGCACAAGTCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGAA
AGCGGAGGTGAATTATGAAATTCAACAGCTAAAATCGAAAATGCGTGATTCCCAGCTCCAAAAG
TTTCGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGACACATTGATGCTGATG
GTGTCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGGATGAATTGCTTGTCAC
TGAACTGATGTTTAATGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTGCAAGC
TGTTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAAACCAT
TGCAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAG

Genomic sequence GATATGAATATTCAAGACACAGAGATAGTGGATCTGGTCAGCCAAATCGAAGAAGTTGAGCAGA
AGTTACTTGCTCATCCGATGCACAAGGTCGTGCTAAATGTAGTATTTCTTTGAGCTTCTGAACT
TAAAGAAAAGAAGACAAAATATTGTGAAAGCATATTAAGAACTTAAACAATATATTAATATTTC
TATTGTCTCATTTTTTATGTGTTGCAGTCTGAAGATGATCAACAAATCAAGAGTTTCCAGAGGA
AAGCGGAGGTGAATTATGAAATTCAACAGCTAAAATCGAAAATGCGTGATTCCCAGGTATATTA
CTTACTCTCTCACCCATGAGTAAATGATGCATGGAATCCTTTATTATGTGTGTCCTATCTGCAA
GGAATATCTCCTTTCCAGTAGGGTTGTTACTTGGCATGATAAATTCTGCTTGTATCCAATTTGT
ACTGCTTTCGATTTTCCTATACTTTTTTCCCGTTTAGCTACGTATAGACTAAAACAATATAATA
GGGAGACGAACTTTTACGTTTAAAAGCAAACAAATTGTAGAATGTTCATTGATTACTAGACTCA
CTGCTAGAGTTTAAGATTTCTTTTCATCCCTCTTGTGTCTTACAGCATATTTTTTTTTTTTATC
TCTGCAGCTCCAAAAGTTTCGAGATGAGCTTAAGAACCGATCTCGGGTATTAAAGAAACTTGGA
CACATTGATGCTGATGGTGTCGTCCAGGTAAAGGGACGAGCTGCGTGCTTGATAGACACAGGGG
ATGAATTGCTTGTCACTGAACTGATGTTTAATGGTATGACAACTGCTTTAGCTACACAGTTCTA
AGTGTAGGCCTTTTAGGTGACTGAGGCAGTGTATAATGGTTGTATCACACTATATATAATTGCG
TTGTGTGTTCCTTACCTACCAGGTACTTTTAATGATCTGGATCATCACCAAGTAGCAGCCCTTG
CAAGCTGTTTCATTCCTGTTGATAAATCAAACGAACAGGTAAATTTAAGGAATGAACTTACCAA
ACCATTGCAGCAGCTCCAAGATAGTGCACGGAAAATAGCAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.206565629
Functional Information
Coding potential Y
Potential coding position 2898964-2900024(+)
Potential amino acid sequence MNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKF
RDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASC
FIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKS
EDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAA
CLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARK
IAEDMNIQDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQ
LQKFRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA
LASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEDMNIQDTEIVDLVSQIEEVEQKLLAHP
MHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQVK
GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQD
SARKIAE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017