Detail information of BGIOSGA017382_circ_igg.3


General Information
CircRNA Name BGIOSGA017382_circ_igg.3
ID in PlantcircBase osi_circ_015028
Alias Chr04:35608824_35613487(MH63RS2), Chr04:35795164_35799828(ZS97RS2), Chr04:35608824_35613487(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 34169294-34173958  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA017382_circ_g.1 BGIOSGA017382_circ_g.2 BGIOSGA017382_circ_g.3 BGIOSGA017382_circ_g.4 BGIOSGA017382_circ_igg.1 BGIOSGA017382_circ_igg.2 BGIOSGA017382_circ_igg.4 BGIOSGA017382_circ_igg.5 BGIOSGA017382_circ_igg.6 BGIOSGA017382_circ_igg.7 BGIOSGA017382_circ_igg.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGATTGCTGTTAATTACCTGGAAACTGAACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAG
CGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGgatgggctcggagaggtgatgtttggga
agcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacc
tcctatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGG
TGTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATG
CAGGTACGAGAATTTTGCATTGGAATACTTAGTTTCTTACTTATTGTAAGTTGTAACCGTGTAG
TGGAGATAGCCTGATTTTGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTT
ACAATGCCATGACTATATGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATAT
TCAAATTTGGCACTTGTGAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTT
TTTTTTTTATAAAATGATTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTT
GGACTAAAACCTAATGTCAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTC
CAGACAGGGCATTGAAATGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTC
TTATCATTGCTTGGTGACTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACA
GGAATCATTAGTGTCTGTAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTG
TTCACTGGTCTAGATGGCTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCA
GAGAATATTTCCTCCTGATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGC
ATGGGGGAGTCTGATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATA
TTGATGATAGCTGAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTT
TGTCCTTTGGTTCTGCCAGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGT
GTTTAATATGCCATTTCCTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGG
AGTCTGCCAACAATCATTTGTCATTACTCATTGCCACCTTTTGGAGTTCCTGGAAATTGCATTG
AACTAACACTCTTTGTTTCCATGGCAGCAATGTCTTTGATCAAACTGTTCCCTCACATTCAGAC
ACCAGTGGCTTGTGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGC
TGGCCTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACA
GGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGG
CACAGGTAAATATTCTTGAGATATTGACAGATTCAATTTTTGTTTCTCTCCATCCTTTCAGTAT
AGTCCAACTTGATATAAAATCCAATTCCATATATGTGTATAAATGCAAGTAAAGCTATACCACG
TTACCAGTTACCACCCACACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTACC
GACCATGATAGAGCCTGCGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGCTT
ATAGGCATATGCTTGAACACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCCTA
CAAGGTTTGGTTTTGTAACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGTAC
GACAAACCAATCTGTGTCGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAAAG
TTGGACGAGCTTTTTTCTCTTGGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGATCT
TAAAAAAACCATAGTCAAGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGTTG
GGCTTATTCAATGGGGGAATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGATGA
TGACTGTTTTCTCATTTAAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCTTA
ACGTAGCTCAGCCCGATTCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTTTT
ACTAGTAGGACACTTGAATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATTTC
TTGAGACTGGTGTTGAGTTTGTGCGTATGTGTGTGATATGAGCTGCGAATCTTAGCTGGCCGGT
ATCTTTCATTGAATCGAAAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGCTT
CATTTATGCCTGTTATTTAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAAAT
TCTTTCAAAGAAATCTTGATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAAAATTT
CATAGTACCAATTACCCCCTCCATCCCAAAATATAACAACTTCTATCACTAAGAGTTTGTTCCA
AAATAAAATAACTTATCCACCAACATTCTCTTCCTAACTAATCATAACACTGCACCATTCAATT
TTTCCATCTACCTCCACTTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCT
TACTAATTGTGTTTAATCCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAAC
AGTATGAAGTACTACAATGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAAT
AATTCAGTGTGATATTTGGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAA
ATACTTGTCACTAGTTACTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAG
CTTTGATCACTCGCCCTTTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGC
GATGTGTGTTCCATAAATACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTA
TTAATGGTTAAAGGTGAAACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACA
TATTTTCTAAAGATAGGTACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGC
AGAACAAAAATATTTTGGTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATTTTT
TTTTTCTATGATAAGAGAATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTAT
AGAATTTGCAGAATGAATAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAA
GAATACCATCCTTAAAACAAAGATCTACATCTATGGTTAGTCAGAGGGAAGTGGATTCTAATCC
CTCGAGGGGATATCCCCTCGTATATCTTTTTCTTCCAAATTCAATGCAAATAGTTGTGAAAAAT
TCTGAAAAAAATTAACAATGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAA
ATTCGATCTACACATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCA
TACGCTGAATGTCTTGTTTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGAAG
TTGTATATATGTGTTGTATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGATG
GTTTTTGAGCAAACGAGCGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGTAT
GTTTAACGTTGTTTGCTCCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCTTT
GTCGATCGAATTTCGATCCCATCACTGCCGATGAACTGACATTAAACCAAAACGGAAGAAGCCT
TATGGTATGGGTGGAGAATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAGTA
CTCCCTCCGTCCCATAATATAAGTGATTTTAGAGGTATGTGACGTTTCCTCGGACTACGAATCT
AGATCATATCCCTCTAAAATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAATG
ACACAACAGGATAGCAGAAACTGAAAACTTCCTTTCATTTTCTGGGGAAAGAAGGGGAAATTTG
ACGTTTGGAGCTCATCTGTAGTGGAGATTTAACTGTTCCAAAAGCTTAGAATAGTGGCAGCTAT
GTTGATACAGCACTATGTTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGAAG
GGACCATTGCTAGTTGGCCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTACC
TATTTTCTTTGAAAGAGCACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATCAT
AATCTATTTTGCTATACGCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCCAA
CAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGAACTGTACTGGGCGA
GTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Conservation Information
Conserved circRNAs osa_circ_026035
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR5161
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021