Plant Circular RNA Database

Detail information of Os04g0684500_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os04g0684500_circ_g.7
					
						ID in PlantcircBase
						osa_circ_026035
					
						Alias
						Os04circ18484/Os_ciR9692
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr4: 34965141-34969807  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						SMALT, Segemehl, find_circ
					
						Parent gene
						
							Os04g0684500						
					
						Parent gene annotation
						
							Pentatricopeptide repeat domain containing protein. (Os04t068450
0-01);Hypothetical conserved gene. (Os04t0684500-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os04g0684500_circ_g.2 Os04g0684500_circ_g.3 Os04g0684500_circ_g.4 Os04g0684500_circ_g.5 Os04g0684500_circ_g.6 Os04g0684500_circ_g.8 						
					
						Support reads
						23/2
					
						Tissues
						leaf and panicle/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os04t0684500-01:4
Os04t0684500-02:4

General Information
CircRNA Name	Os04g0684500_circ_g.7
ID in PlantcircBase	osa_circ_026035
Alias	Os04circ18484/Os_ciR9692
Organism	Oryza sativa
Position	chr4: 34965141-34969807 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	SMALT, Segemehl, find_circ
Parent gene	Os04g0684500
Parent gene annotation	Pentatricopeptide repeat domain containing protein. (Os04t068450 0-01);Hypothetical conserved gene. (Os04t0684500-02)
Parent gene strand	+
Alternative splicing	Os04g0684500_circ_g.2 Os04g0684500_circ_g.3 Os04g0684500_circ_g.4 Os04g0684500_circ_g.5 Os04g0684500_circ_g.6 Os04g0684500_circ_g.8
Support reads	23/2
Tissues	leaf and panicle/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os04t0684500-01:4 Os04t0684500-02:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAG
CGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGatgggctcggagaggtgatgtttgggaa
gcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacct
cctatata

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1079
Transcript exons: 34965141-34965270,34965553-34966137,34966320-34966553,34
969678-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTTGGACTAAAACCTAATGTCAAGACATA
TACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCATTGAAATGCTTTGAG
GAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTTGGTGACTTCACTTC
TGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGTGTCTGTAGAGAAAT
GTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTAGATGGCTTCACAAG
ATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCCTCCTGATTGGAATT
CATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCTGATGATTACAGTGA
TTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGATAGCTGAAAAACTCTAGAT
TCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTTTGTCCTTTGGTTCTGCCAGAGTGGAT
GACCGAACAAGCAATGTCTTTGATCAAACTGTGCCCTCACATTCAGACACCAGTGGCTTGTGGA
CTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGCTGGCCTCTGCTGCGTT
TCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACA
GACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGAGAGGCCAACA
GGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGT
GATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 160
Transcript exons: 34965141-34965259,34969767-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGGAAGCGCC
AAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 165
Transcript exons: 34965141-34965252,34969755-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCTGAAGGTAGGATGGAA
GCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 173
Transcript exons: 34965141-34965192,34969687-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGCAGGAGCTATAA
AATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTA
GGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 191
Transcript exons: 34965141-34965196,34969673-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGCGCAGAGA
GGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACT
GGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 194
Transcript exons: 34965141-34965259,34969733-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCTGTACTGT
ACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTC
AG
Transcript length: 201
Transcript exons: 34965141-34965259,34969726-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCTGGAAACT
GTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGG
AAAATTCAG
Transcript length: 216
Transcript exons: 34965141-34965223,34969675-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACAGAGAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTT
AATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCT
GTGAACAACTGAGGGAAAATTCAG
Transcript length: 227
Transcript exons: 34965141-34965235,34969676-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTAGAGAGGCCAACAGGAGCTATAAAATGATGTTC
CGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGC
GCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 245
Transcript exons: 34965141-34965270,34969693-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGA
TGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 250
Transcript exons: 34965141-34965266,34969684-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATCA
ACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCG
AGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 255
Transcript exons: 34965141-34965270,34969683-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACT
GGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 329
Transcript exons: 34965141-34965270,34966481-34966554,34969683-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGCACAGGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAAT
GGCTGGCACAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACT
GTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGG
AAAATTCAG
Transcript length: 346
Transcript exons: 34965141-34965259,34966441-34966553,34969694-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCAAGAGCAA
CAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACAGACGAAGCTTACT
CAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGTATAAAATGATGTTCCGATTGCTG
TTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTG
CTGTGAACAACTGAGGGAAAATTCAG
Transcript length: 386
Transcript exons: 34965141-34965270,34966430-34966553,34969676-34969807
ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTC
AATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGAG
AGAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGT
ACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTC
AG
						
					

						Genomic sequence
						
							ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT
GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC
AGGTACGAGAATTTTGCATTGGAATACTTAGTTTCTTACTTATTGTGAGTTGTAACCGTGTAGT
GGAGATAGCCTGATTTTGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTTA
CAATGCCATGACTATATGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATATT
CAAATTTGGCACTTGTGAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTAT
TTTTTTTTATAAAATGATTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTT
GGACTAAAACCTAATGTCAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTC
CAGACAGGGCATTGAAATGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTC
TTATCATTGCTTGGTGACTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACA
GGAATCATTAGTGTCTGTAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTG
TTCACTGGTCTAGATGGCTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCA
GAGAATATTTCCTCCTGATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGC
ATGGGGGAGTCTGATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATA
TTGATGATAGCTGAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTT
TGTCCTTTGGTTCTGCCAGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGT
GTTTAATATGCCATTTCCTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGG
AGTCTGCCAACAATCATTTGTCATTACTCATTGCCACTTTTTGGAGTTCCTGGAAATTGCATTG
AACTAACACTCTTTGTTTCCATGGCAGCAATGTCTTTGATCAAACTGTGCCCTCACATTCAGAC
ACCAGTGGCTTGTGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGC
TGGCCTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACA
GGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGG
CACAGGTAAATATTCTTGAGATATTGACAGATTCAATTGTTGTTTCTCTCCATCCTTTCAGTAT
AGTCCAACTTGATATAAAATCCAATTCCATATATATGTGTATAAATGCAAGTAAAGCTATACCA
CGTTACCAGTTACCACCCACACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTA
CCGACCATGATAGAGCCTGCGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGC
TTATAGGCATATGCTTGAACACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCC
TACAAGGTTTGGTTTTGTAACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGT
ACGACAAACCAATCTGTGTCGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAA
AGTTGGACGAGCTTTTTTCTCTTCGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGAT
CTTAAAAAAACCATAGTCAAGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGT
TGGGCTTATTCAATGGGGGAATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGAT
GATGACTGTTTTCTCATTTAAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCT
TAACGTAGCTCAGCCCGATTCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTT
TTACTAGTAGGACACTTGAATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATT
TCTTGAGACTGGTGTTGAGTTTGTGCGTATGTGTGTGCTATGAGCTGCGAATCTTAGCTGGCCG
GTATCTTTCATTGAATCGAAAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGC
TTCATTTATGCCTGTTATTTAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAA
ATTCTTTCAAAGAAATCTTGATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAATTT
CATAGTACCAATTACCCCCTCCATCCCAAAATATAATAACTTCTATCACTAAGAGTTTGTTCCA
AAATAAAATAACTTATCCACCAACATTCTCTTCCTAACTAATCATAACCCTGCACCATTTAATT
TTTCCATCTACCTCCACTTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCT
TAATAATTGTGTTTAATCCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAAC
AGTATGAAGTACTACAATGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAAT
AATTCAGTGTGATATTTGGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAA
ATACTTGTCACTAGTTACTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAG
CTTTGATCACTCGCCCTTTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGC
GATGTGTGTTCCATAAATACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTA
TTAATGGTTAAAGGTGAAACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACA
TATTTTCTAAAGATAGGTACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGC
AGAACAAAAATATTTTGGTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATATTT
TTTTTCTATGATAAGAGAATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTAT
AGAATTTGCAGAATGAATAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAA
GAATACCACCCTTAAAACAAAGATCTACATCTATGGTTAGTCAGAGGGGAGTAGATTCTAATCC
CTCGAGGGGATATCCCTTCGTATATCTTTTTCTTCCAAATTCGATGCAAATAGTTGTGAAAAAT
TCTGAAAAAAATTGACAACGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAA
ATTCGATCTACACATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCA
TACGCTGAATTTGTCTTTTTTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGA
AGTTGTATATATGTGTTGTATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGA
TGGTTTTTGAGCAAACGAGCGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGT
ATGTTTAACGTTGTTTGCTCCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCT
TTGTCGATCGAATTTCGATCCCATCACTGCCGATGAACTGACATTGAACCAAAACGGAAGAAGC
CTTATGGTATGGGTGGAGAATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAG
TACTCCCTCCGTCCCATAATATAAGGGATTTTAGAGGTATGTGATGTTTCCTCGGACTACGAAT
CTAGATCACATCCCTCTAAAATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAA
TGACACAACAGGATAGCAGAAACTGAAAACTTCCTTTCATTTTCTGGGGAAAAAAGGGGAAATT
TGACGTTTGGAGCTCATCTGTAGTGGAGATTTAACTGTTCCAAAAGTTTAGAATAGTGGCAGCT
ATGTTGATACAGCACTATGTTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGA
AGGGACCATTGCTAGTTGGCCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTA
CCTATTTTCTTTGAAAGAGCACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATC
ATAATCTATTTTGCTATACGCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCC
AACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGC
GAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG
						
					

			
		

Sequences
Splice junction sequence	CCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAG CGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGatgggctcggagaggtgatgtttgggaa gcagaggacttgatgaagcagatgaaagaagatggtgtccctcctaacatccatacttatacct cctatata
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1079 Transcript exons: 34965141-34965270,34965553-34966137,34966320-34966553,34 969678-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTTGGACTAAAACCTAATGTCAAGACATA TACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCATTGAAATGCTTTGAG GAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTTGGTGACTTCACTTC TGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGTGTCTGTAGAGAAAT GTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTAGATGGCTTCACAAG ATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCCTCCTGATTGGAATT CATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCTGATGATTACAGTGA TTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGATAGCTGAAAAACTCTAGAT TCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTTTGTCCTTTGGTTCTGCCAGAGTGGAT GACCGAACAAGCAATGTCTTTGATCAAACTGTGCCCTCACATTCAGACACCAGTGGCTTGTGGA CTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGCTGGCCTCTGCTGCGTT TCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACA GACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGAGAGGCCAACA GGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGT GATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 160 Transcript exons: 34965141-34965259,34969767-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGGAAGCGCC AAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 165 Transcript exons: 34965141-34965252,34969755-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCTGAAGGTAGGATGGAA GCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 173 Transcript exons: 34965141-34965192,34969687-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGCAGGAGCTATAA AATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTA GGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 191 Transcript exons: 34965141-34965196,34969673-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGCGCAGAGA GGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACT GGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 194 Transcript exons: 34965141-34965259,34969733-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCTGTACTGT ACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTC AG Transcript length: 201 Transcript exons: 34965141-34965259,34969726-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCTGGAAACT GTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGG AAAATTCAG Transcript length: 216 Transcript exons: 34965141-34965223,34969675-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACAGAGAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTT AATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCT GTGAACAACTGAGGGAAAATTCAG Transcript length: 227 Transcript exons: 34965141-34965235,34969676-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTAGAGAGGCCAACAGGAGCTATAAAATGATGTTC CGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGC GCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 245 Transcript exons: 34965141-34965270,34969693-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGA TGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 250 Transcript exons: 34965141-34965266,34969684-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATCA ACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGCG AGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 255 Transcript exons: 34965141-34965270,34969683-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACT GGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG Transcript length: 329 Transcript exons: 34965141-34965270,34966481-34966554,34969683-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGCACAGGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAAT GGCTGGCACAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACT GTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGG AAAATTCAG Transcript length: 346 Transcript exons: 34965141-34965259,34966441-34966553,34969694-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGCAAGAGCAA CAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACAGACGAAGCTTACT CAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGTATAAAATGATGTTCCGATTGCTG TTAATTACCTGGAAACTGTACTGTACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTG CTGTGAACAACTGAGGGAAAATTCAG Transcript length: 386 Transcript exons: 34965141-34965270,34966430-34966553,34969676-34969807 ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTC AATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGAG AGAGGCCAACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGT ACTGGGCGAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTC AG
Genomic sequence	ATGGGCTCGGAGAGGTGATGTTTGGGAAGCAGAGGACTTGATGAAGCAGATGAAAGAAGATGGT GTCCCTCCTAACATCCATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGC AGGTACGAGAATTTTGCATTGGAATACTTAGTTTCTTACTTATTGTGAGTTGTAACCGTGTAGT GGAGATAGCCTGATTTTGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTTA CAATGCCATGACTATATGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATATT CAAATTTGGCACTTGTGAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTAT TTTTTTTTATAAAATGATTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTT GGACTAAAACCTAATGTCAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTC CAGACAGGGCATTGAAATGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTC TTATCATTGCTTGGTGACTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACA GGAATCATTAGTGTCTGTAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTG TTCACTGGTCTAGATGGCTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCA GAGAATATTTCCTCCTGATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGC ATGGGGGAGTCTGATGATTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATA TTGATGATAGCTGAAAAACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTT TGTCCTTTGGTTCTGCCAGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGT GTTTAATATGCCATTTCCTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGG AGTCTGCCAACAATCATTTGTCATTACTCATTGCCACTTTTTGGAGTTCCTGGAAATTGCATTG AACTAACACTCTTTGTTTCCATGGCAGCAATGTCTTTGATCAAACTGTGCCCTCACATTCAGAC ACCAGTGGCTTGTGGACTATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGC TGGCCTCTGCTGCGTTTCTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACA GGCTGTCAATGCAACAGACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGG CACAGGTAAATATTCTTGAGATATTGACAGATTCAATTGTTGTTTCTCTCCATCCTTTCAGTAT AGTCCAACTTGATATAAAATCCAATTCCATATATATGTGTATAAATGCAAGTAAAGCTATACCA CGTTACCAGTTACCACCCACACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTA CCGACCATGATAGAGCCTGCGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGC TTATAGGCATATGCTTGAACACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCC TACAAGGTTTGGTTTTGTAACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGT ACGACAAACCAATCTGTGTCGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAA AGTTGGACGAGCTTTTTTCTCTTCGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGAT CTTAAAAAAACCATAGTCAAGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGT TGGGCTTATTCAATGGGGGAATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGAT GATGACTGTTTTCTCATTTAAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCT TAACGTAGCTCAGCCCGATTCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTT TTACTAGTAGGACACTTGAATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATT TCTTGAGACTGGTGTTGAGTTTGTGCGTATGTGTGTGCTATGAGCTGCGAATCTTAGCTGGCCG GTATCTTTCATTGAATCGAAAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGC TTCATTTATGCCTGTTATTTAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAA ATTCTTTCAAAGAAATCTTGATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAATTT CATAGTACCAATTACCCCCTCCATCCCAAAATATAATAACTTCTATCACTAAGAGTTTGTTCCA AAATAAAATAACTTATCCACCAACATTCTCTTCCTAACTAATCATAACCCTGCACCATTTAATT TTTCCATCTACCTCCACTTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCT TAATAATTGTGTTTAATCCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAAC AGTATGAAGTACTACAATGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAAT AATTCAGTGTGATATTTGGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAA ATACTTGTCACTAGTTACTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAG CTTTGATCACTCGCCCTTTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGC GATGTGTGTTCCATAAATACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTA TTAATGGTTAAAGGTGAAACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACA TATTTTCTAAAGATAGGTACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGC AGAACAAAAATATTTTGGTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATATTT TTTTTCTATGATAAGAGAATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTAT AGAATTTGCAGAATGAATAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAA GAATACCACCCTTAAAACAAAGATCTACATCTATGGTTAGTCAGAGGGGAGTAGATTCTAATCC CTCGAGGGGATATCCCTTCGTATATCTTTTTCTTCCAAATTCGATGCAAATAGTTGTGAAAAAT TCTGAAAAAAATTGACAACGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAA ATTCGATCTACACATCGAGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCA TACGCTGAATTTGTCTTTTTTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGA AGTTGTATATATGTGTTGTATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGA TGGTTTTTGAGCAAACGAGCGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGT ATGTTTAACGTTGTTTGCTCCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCT TTGTCGATCGAATTTCGATCCCATCACTGCCGATGAACTGACATTGAACCAAAACGGAAGAAGC CTTATGGTATGGGTGGAGAATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAG TACTCCCTCCGTCCCATAATATAAGGGATTTTAGAGGTATGTGATGTTTCCTCGGACTACGAAT CTAGATCACATCCCTCTAAAATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAA TGACACAACAGGATAGCAGAAACTGAAAACTTCCTTTCATTTTCTGGGGAAAAAAGGGGAAATT TGACGTTTGGAGCTCATCTGTAGTGGAGATTTAACTGTTCCAAAAGTTTAGAATAGTGGCAGCT ATGTTGATACAGCACTATGTTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGA AGGGACCATTGCTAGTTGGCCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTA CCTATTTTCTTTGAAAGAGCACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATC ATAATCTATTTTGCTATACGCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCC AACAGGAGCTATAAAATGATGTTCCGATTGCTGTTAATTACCTGGAAACTGTACTGTACTGGGC GAGTGATGAAGGTAGGATGGAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005858* osi_circ_015028 						
					
						PMCS
						0.57936293

Conservation Information
Conserved circRNAs	osi_circ_005858* osi_circ_015028
PMCS	0.57936293

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							34969766-34965178(+)
34965224-34969724(-)
34965220-34969720(-)
						
						Potential amino acid sequence
						
							MEAPSCCEQLRENSDGLGEVMFGKQRT*(+)
MDVRRDTIFFHLLHQVLCFPNITSPSPSEFSLSCSQQLGASILPSSLAQYSTVSR*(-)
MLGGTPSSFICFIKSSASQTSPLRAHLNFPSVVHSSLALPSYLHHSPSTVQFPGN*(-)
						
						Sponge-miRNAs
						
							osa-miR5161 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	34969766-34965178(+) 34965224-34969724(-) 34965220-34969720(-)
Potential amino acid sequence	MEAPSCCEQLRENSDGLGEVMFGKQRT(+) MDVRRDTIFFHLLHQVLCFPNITSPSPSEFSLSCSQQLGASILPSSLAQYSTVSR(-) MLGGTPSSFICFIKSSASQTSPLRAHLNFPSVVHSSLALPSYLHHSPSTVQFPGN*(-)
Sponge-miRNAs	osa-miR5161
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015

circRNA

Detail information of Os04g0684500_circ_g.7

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