Detail information of BGIOSGA017382_circ_igg.8


General Information
CircRNA Name BGIOSGA017382_circ_igg.8
ID in PlantcircBase osi_circ_000545
Alias NA
Organism Oryza sativa ssp. indica
Position chr4: 34169375-34174129  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method DCC
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA017382_circ_g.1 BGIOSGA017382_circ_g.2 BGIOSGA017382_circ_g.3 BGIOSGA017382_circ_g.4 BGIOSGA017382_circ_igg.1 BGIOSGA017382_circ_igg.2 BGIOSGA017382_circ_igg.3 BGIOSGA017382_circ_igg.4 BGIOSGA017382_circ_igg.5 BGIOSGA017382_circ_igg.6 BGIOSGA017382_circ_igg.7
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGATGAGCTATGCTTAGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTGGGTCC
TCCAGAATATATACCCCTGCATGTGTCACTGACATCatacttatacctcctatataaatgcatg
ctgcaaggcaggagacatgcaggtacgagaattttgcattggaatacttagtttcttacttatt
gtaagttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACTTATACCTCCTATATAAATGCATGCTGCAAGGCAGGAGACATGCAGGTACGAGAATTTTG
CATTGGAATACTTAGTTTCTTACTTATTGTAAGTTGTAACCGTGTAGTGGAGATAGCCTGATTT
TGATAGGATATGTGCACATGTTTTAAGGTAGCTGACCAAAATATTTTACAATGCCATGACTATA
TGCCCGAATTATTTCAGCACTACAGATTTACCTAGGTGGCTACATATTCAAATTTGGCACTTGT
GAATGGAGAAGTATTCTCTTGGGGCCTTCTTGTAATCTATCCAATTTTTTTTTTTATAAAATGA
TTTGTTTGTAGAGAGCAGAAAAGGTGATTGAAGAAATGGTAGATGTTGGACTAAAACCTAATGT
CAAGACATATACTACCTTGATTAAAGGTTGGGCAAGAGTGTCACTTCCAGACAGGGCATTGAAA
TGCTTTGAGGAGATGAAACTTGCTGGGTTGAAACCTGATGAGGCTTCTTATCATTGCTTGGTGA
CTTCACTTCTGTCAAGGGCAACTGTAATGGAGGGAAGTACCTACACAGGAATCATTAGTGTCTG
TAGAGAAATGTCTGAGAATGATTTGACTGTTGATCTTCGCACTGCTGTTCACTGGTCTAGATGG
CTTCACAAGATTGAGAGGACTGGAGGGGCACTAACAGAAGCGCTTCAGAGAATATTTCCTCCTG
ATTGGAATTCATTAGAATTTTTAGGAGAGCCATCCAGTTCTATAAGCATGGGGGAGTCTGATGA
TTACAGTGATTCAGATTTTAGCGGTGATGAAGATGAGGATCATAATATTGATGATAGCTGAAAA
ACTCTAGATTCCAGAGCCTGTTTTTCTTGTTCTGTGCCCTCACTTTTTGTCCTTTGGTTCTGCC
AGAGTGGATGACCGAACAAGGTATTATGTGTTGAACTGTTAATATGTGTTTAATATGCCATTTC
CTTTTGGTGATGTTTCTAAAAAGCACACATAATAATTCTTGAAAAGGAGTCTGCCAACAATCAT
TTGTCATTACTCATTGCCACCTTTTGGAGTTCCTGGAAATTGCATTGAACTAACACTCTTTGTT
TCCATGGCAGCAATGTCTTTGATCAAACTGTTCCCTCACATTCAGACACCAGTGGCTTGTGGAC
TATCCAAGAGCGTTTGGAATCTTATAGTGCAATAAGCGTGAGCTGGCTGGCCTCTGCTGCGTTT
CTTCAAGAGCAACAGTCAGTAACAGTTCTACTGGGACTGAAGACACAGGCTGTCAATGCAACAG
ACGAAGCTTACTCAGTTATGCGTGTAGCTGTACATATCAATGGCTGGCACAGGTAAATATTCTT
GAGATATTGACAGATTCAATTTTTGTTTCTCTCCATCCTTTCAGTATAGTCCAACTTGATATAA
AATCCAATTCCATATATGTGTATAAATGCAAGTAAAGCTATACCACGTTACCAGTTACCACCCA
CACCCCTTCTTGGCTTGCCTTTTGTAGTGTGCCATGTGAAATGTACCGACCATGATAGAGCCTG
CGTGCCCATTTTTCAACATCCAAATGTTAGGAGTGGTAGGAGCGCTTATAGGCATATGCTTGAA
CACCACTTTGATTGGCAGAATTTTGTAGGGGCAGCACAGTGTGCCTACAAGGTTTGGTTTTGTA
ACCACATCCCTGGACAAGCCGTTCGATGCTTATTTGAATACTAGTACGACAAACCAATCTGTGT
CGTGGTGCTCGTAAAAGCTGAGATCATTTAAACTTGTAAGTAGAAAGTTGGACGAGCTTTTTTC
TCTTGGAGAGAATGCACAGGCCCTCATGTTCTTTGTTTTGATGATCTTAAAAAAACCATAGTCA
AGGTAAATAGGAGCAAAGATTGGTATCTTGCACATTATTGCGGGTTGGGCTTATTCAATGGGGG
AATTCCCTATTGAAACTGAAGTACAAGTCCAATCAAGTGCTAGATGATGACTGTTTTCTCATTT
AAGGTTTGGCATCTTCCAGTACAGCAGCTTCAATCAAATGGGCCTTAACGTAGCTCAGCCCGAT
TCAATATTACTTGGAATTGCACGCCTCTGTCCAAGCTGAAAGCTTTTACTAGTAGGACACTTGA
ATGCCTGCACAAGACGGCATTAATGCTGTGCTTATGAGCCCGATTTCTTGAGACTGGTGTTGAG
TTTGTGCGTATGTGTGTGATATGAGCTGCGAATCTTAGCTGGCCGGTATCTTTCATTGAATCGA
AAGTGGCCTCCCCATTCAAGTCTTGCCCACAAGATAAAACAGTGCTTCATTTATGCCTGTTATT
TAATTTTGCTTAGCTGCATCTCGCTTCTCCATTCATACACCATAAATTCTTTCAAAGAAATCTT
GATTGTATTAGTGTTGTATTAGGCCTTTGTTCGGAGAGAAAAAATTTCATAGTACCAATTACCC
CCTCCATCCCAAAATATAACAACTTCTATCACTAAGAGTTTGTTCCAAAATAAAATAACTTATC
CACCAACATTCTCTTCCTAACTAATCATAACACTGCACCATTCAATTTTTCCATCTACCTCCAC
TTCTCAACCAATCACAATATCATCATATTTAATTCTATCTACTTTCTTACTAATTGTGTTTAAT
CCTAAAATTTCTTATGTTCTGGGACGGAGATAGTAGCATGTATGAACAGTATGAAGTACTACAA
TGTAAATATTTTGCCTGAAACATGCTTTGTTTTTTTTCATGCCAAATAATTCAGTGTGATATTT
GGTAATTCATACAGTATTCCTTCCTTTTATACCCACTCTAGTTTCAAATACTTGTCACTAGTTA
CTACTTACTACTAGCTTTTTTCCCTAAAAAAGTTACTAGCTTTTTAGCTTTGATCACTCGCCCT
TTTTGCAAAAATGAAACATATGTATACTTAAAATATGTTGCATTAGCGATGTGTGTTCCATAAA
TACAACCAGACAACTTTCACTAATAATAACTTAATCTTTAAAAGTTATTAATGGTTAAAGGTGA
AACATTATGGTTAACATTGACAAGTAAATAAAGATGGAAGGAATACATATTTTCTAAAGATAGG
TACGGTCCTACAGGCTTTGTCCAGCAAAAAAAAAAGGACAGTTCTGCAGAACAAAAATATTTTG
GTGGAGTTTTTAAACATTGCATCCAACAGAAGCCTTATGGTATTTTTTTTTTCTATGATAAGAG
AATTTATTCTGGTTTTTTACTTAAAAGAAGCTGCAACCAATTATTATAGAATTTGCAGAATGAA
TAGCTGCGGATTACAAAATTATGAAACACAAAGTAGAAAACTACTAAGAATACCATCCTTAAAA
CAAAGATCTACATCTATGGTTAGTCAGAGGGAAGTGGATTCTAATCCCTCGAGGGGATATCCCC
TCGTATATCTTTTTCTTCCAAATTCAATGCAAATAGTTGTGAAAAATTCTGAAAAAAATTAACA
ATGTAGAGTATAATGATACCTACTAGTCCACCAAAATTCATGTTCAAATTCGATCTACACATCG
AGAAACAAAAAAGACAAATTTAGATATAAACAGTACGTTACTATTCATACGCTGAATGTCTTGT
TTATATCTCGACGTGGGAGTTGAGTTTGGACTTAAGATTTTGTGAAGTTGTATATATGTGTTGT
ATGAATGTTGTCAAATTTTTCCAGAATTTTTCATAACCGTTTAGATGGTTTTTGAGCAAACGAG
CGAACATCCCCTCGAGGGATTAGAATAGTTTCCCTTAGTCAGAGTATGTTTAACGTTGTTTGCT
CCAATGGTTATAAGTTGTACAGTCTCTGAAACCAGCAGCCGATCTTTGTCGATCGAATTTCGAT
CCCATCACTGCCGATGAACTGACATTAAACCAAAACGGAAGAAGCCTTATGGTATGGGTGGAGA
ATGAAAATAGGAAAGAGACAGGAAACATCTTTATTCCTAAACTAGTACTCCCTCCGTCCCATAA
TATAAGTGATTTTAGAGGTATGTGACGTTTCCTCGGACTACGAATCTAGATCATATCCCTCTAA
AATCCCTTATATTATGGGATGGAGAGAGTAACAATTAATAGGAAATGACACAACAGGATAGCAG
AAACTGAAAACTTCCTTTCATTTTCTGGGGAAAGAAGGGGAAATTTGACGTTTGGAGCTCATCT
GTAGTGGAGATTTAACTGTTCCAAAAGCTTAGAATAGTGGCAGCTATGTTGATACAGCACTATG
TTATCTTTTCTCAGCAGACGTGCTGGTAAAAAAAATTTAGTGCGAAGGGACCATTGCTAGTTGG
CCCTTACTTTTATATTACTGTAACTGATCCAGAATTAAATTTCTACCTATTTTCTTTGAAAGAG
CACGAAAGCACATATCAATAATTTTGGTAATATTATTCATTTATCATAATCTATTTTGCTATAC
GCTCCGACCACTGCACAATGACAGTATTTATTTCGCAGAGAGGCCAACAGGAGCTATAAAATGA
TGTTCCGATTGCTGTTAATTACCTGGAAACTGAACTGTACTGGGCGAGTGATGAAGGTAGGATG
GAAGCGCCAAGCTGCTGTGAACAACTGAGGGAAAATTCAGGTGTAATTTCCTCTCTAGTCTCTA
GAATTACAAGGCAAGGTATATATTTTTAACGTTTTTGTTTATGAATAGAAGATGAGCTATGCTT
AGATTATGGATTGTATAGTACCCGCCCATTGAGGCTGGGCTGGGTCCTCCAGAATATATACCCC
TGCATGTGTCACTGACATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019