Detail information of BGIOSGA010316_circ_ig.14


General Information
CircRNA Name BGIOSGA010316_circ_ig.14
ID in PlantcircBase osi_circ_013264
Alias Chr03:32673687_32678108(MH63RS2), Chr03:32673687_32678108(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 25414345-25418770  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010316_circ_ig.1 BGIOSGA010316_circ_ig.2 BGIOSGA010316_circ_ig.3 BGIOSGA010316_circ_ig.4 BGIOSGA010316_circ_ig.5 BGIOSGA010316_circ_ig.6 BGIOSGA010316_circ_ig.7 BGIOSGA010316_circ_ig.8 BGIOSGA010316_circ_ig.9 BGIOSGA010316_circ_ig.10 BGIOSGA010316_circ_ig.11 BGIOSGA010316_circ_ig.12 BGIOSGA010316_circ_ig.13 BGIOSGA010316_circ_ig.15 BGIOSGA010316_circ_ig.16 BGIOSGA010316_circ_ig.17 BGIOSGA010316_circ_ig.18 BGIOSGA010316_circ_ig.19 BGIOSGA010316_circ_ig.20
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCAAAGGAGCAGCTTAAATACCTCAGTTCATTTGGTAAGTTTACTGTATGCTATATACAAG
TGATCTCCAATATGGGACCTTTCATGATATCCAAACcagattcagaagtttggatcactgaagg
ctgcaacatggactgttcacttcagaaaagagtcgacacttcaaatttatctacactgatcaca
caacctaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTCAGAAGTTTGGATCACTGAAGGCTGCAACATGGACTGTTCACTTCAGAAAAGAGTCGA
CACTTCAAATTTATCTACACTGATCACACAACCTAATAGATTCACCGGACACCAAACTAATGAC
ATATATTTTGACAAAATATGTAGCAGAGAAAGTACTAATCATTCATAAATTACACCATGAACGT
TGCTTACCACGTAGAGCAACAATCGACAGAAAGCCAAGCTTGCACTGTTGTTTCCAGCTTCCTA
TAGATTTTCCTGCAAAACTATAAAACTGGTGAATTTCAACACCAAACATGGCCAATGATATTTA
ATCATGAAAAATCGGTATAAATCTAACGGCCTCATCTTTTCGCTTATGCTTATTAGCCAGAATT
TAAATTTTCAACCTTAAATTTGGAGTTGATTTTGGGTTTTTTTTCACCGTAGTTTATTTTTTAG
CCTTTGCTTTTAGATCGTTAAGAACACGTACATAAAATTTTATTCACAAATTATTTTTCGTTTG
CAAATAAGCCATTTGGCTTATTCCTCAAATAAGCCAAACAATGGGGTCGTAAAAGGCTAACCTC
AATAAATGGAAATCTTCATTGATCATGATGAATAAAAAACATGACCAGAGCTACTACTATACAT
AAATTAAAAACAATATTTTTTTTATAAAAAAACACTACTAATTGGTGCATCCAACTCACATTAA
TAGATAACTCAGTACAAAAATAGGAACATTGATTCAATAGAATAAGATGCTAATAGCTCTCCCA
TCCCTAATCTCCCAAGTTACTTTAGGAAGGTTGACTTTGAAGATCGTCTGATTTCTAACCAACA
TCTTTTAAGGTGTTGGAGAGGTTGTTGTAAAACATTAAAAATTACATGATTTAGTATAATACAT
TCAATTATTAAGCATCCTGTCACGAACCAGGGGGCTGCTGGAACAACAGAGTCAGCTTCTGCTC
CTAATCTCATACCATTTGTCGTGATCTATGAAGTAAAAATTGTCATTCAGATAATTAATATGAA
GAGAGGAAACCTTATAATACCTTCTAGTGGCAGGCCACACAGTTCTAATAGCCTTCACCTCCAC
TTTTGCAGCAAGGTGGAAGTAATTTTACAAAAAATTAACTAGGTTAGTAGAGTGCAGATGTTCA
GTGCAAAATTACTCACCAGTTGTCTTCCCATAAAACAGAAAAAGTAGTTGAGCCTTATAAAATA
AAAACTTTGATGCAGGGTGTTCAGCATTATTGGTGATTAGGAAATAGTTCCAGTTCTAAACCAG
AGATCTACCGCTGTTTACAAACTGACCAGAATCAAATCTATGGAGCTTTCCCCAGAAAATTTAG
AATGCATATGTTTTACACACTTTTTCAAGAACACACGAATGTACTGCATGCCCTTCATACAAAG
AGGAAGATAGGGTTAGACATATCGTATTACTATATCTGAATAATAAGAGGATGATATAGTTAAA
GCCCTTCATCATGCTCAGAAGTAAAAGAGAGCTGAAACTCACTGATTCAGAAGTTTGGATCACT
GAAGGCTGCAACATGGACTGTTCACTTCAGAAAAGATTCGACACTTCAAATTTATCTACACTGA
TCACACAACCTTATTTCGCTGGACACCAATCTAATGACATATATTTTGACAAAATATGTAGCAG
AGAAAGTACTAATCATTCATAAATTACATCATGACCTATAAAAACACCATGAACGTTGCTTACC
ACATAGAGCAACAATCGACAGAAAACCAGGCTTGCACTGTTGTTTCCAGCTTCCTACAGATTTT
CCTGCAAAACTATGAAACTGGTGAATTTTCAACACCAAACATGGCCAATGATATGTAATCATGA
AAAATCGGTATAAATCTAAAAGGCTAACCTCAATAAATGAAAATCTTCATTGATCATGATGGAT
AAAAAAACATGATCAGAGCTACTACTATACATAAATTAAAAACAATACTTTTTGATTAAAAAAA
CAGTACTAATTGGTGCATCCAACTAACATTAATAGGTAACTCAGTACAATTAGCCCAGCAGCCA
TTTTTCCTAGCCACAACCTTTACCACAATGCATTTTCTACAATTGGCCTCATTTTTGTTTTGAA
AGCAATAATGAGGACAGAAAACATTGGGAGCACAATTTAATTTTATGTCTGGAACAAATTACGA
CCTGGAAAAATCAGAAATGCATTTGCCGATAAAAAAAAAGCCAGTGAAGTTGCAGCCAGGTATT
TGCCATGCCGCTGCCATAGCCTAGCACTCTATAAGTATATGGCCAACAGAAATTGTAAGCATAG
CCTAGCACTCTGTAAGTATATGGCCAACAGAAATTGTAAATATCAATTAATTCAACAAGTATAT
GACAGTCAATACTTCCATTGTAGCCTAAAAACAAACATATAAGAAAAGAATGCATCGACGATTA
TATTCTCTAGCGTGTTCAGACTTTCGATATACATATTGACAAGGCCTCACATAAATTTGAAAGT
GAGTATTAAACTAAGTTCATAAGTGATCTTAAAACAAGTAAAAGAAGACCATTTGGAGTGCGTC
TTCTGGAACCCCTGATTGCCAAGCTTTGTAGCATGATTCTTCAAAGGAGCAATCAACTTCAAAT
GTCTGGTCCAAAATTTCCCCTCCTGATATTCATAATACATAGAACTTGTGTTCATCAAGGGATA
AACCTAGTGAATTACTGTTGAAACACAGGAAACAAATTATCTCCAGAGCATAAGGCCAATCTCA
CAGATAGAGGTACAAAACCTTGATTAAGTCTAACATTCTACAGTGCGGACTCGATATGCACACA
TGACAGTCCATTTCTATTTTAGAGAGAAATCAAACTTCATGTAAATTTTCATTGATGTTGAAAA
TGAAAAATAAGCACCAGTTTACAATAATGCACATAGAATCTATGTTGGCAAGAAATAAATCATT
GCAACGGAGAAGAAACCAAGCATCATTATTATTTCCATACAAAAAAAGAGTTAGAGAAACATCA
GAAATTCATTGAGTAGGACCACATCAATATCTTTATATTTGATGAATAATATCTTTACATTGTT
AATGAAAGTACATCATATATATTGTGGTAAAAGCAGTTCTCAAATGATTTCCAAAAAAAGAAAA
AGAAAAGAAAAGAAAAGCGTATAGCACCCTCAAACTATCACCAACATGACACACTTCCGATGTT
CATGGAAGTATAGGCAAATTATCATGGGGTGTGCAATATACCAGCACCCTGAAGCACCATACAT
AGCCCTTGCACACTCTGGAAACAATTGATCCCAATAAATCCCAAAAGGATATGGGTGAAGTGAT
TCCACACTAATTAACAGAGTTGTATTGTATAAAAAACAAACAATAATCAATATTGATGCAGAAG
TACTTAATAGCACCAATTGTGGTATACATGGTTTTGAGATCTGCAGTTAAATTACAGCAGTTAC
ACCAATTGAGTTTCACAAATGAAAACAACAGACCTAGCTACAGTAGTACAGTGTACATCTAGTG
TAAACTAAAATGCAATCTTAAAATAAAATCATGTTTACCTTCAAGCCAGGGCAGATGGATTGAA
ATTCAATCTTTAAGATTCATAAAAATATTGCCCCTCAAATAATTCCTAGGGTGACAAATACATA
CTGTATACAGAACTAAAAAACTGGAGTCATTGCCTCACATCTTTTTTGAGAAGGTTGAACCAAC
TTAGGAGCAATTTAAGTAAACAATATTCATTCAAACTCATTTTCTTTTCTGAATCTATGACCAA
AATAAACATGGTTTGTTGAAATTTAGTGATCCAGCAACGGGAACAATATTTATCATATAAACGC
ACCTTAATGAGGACAAAGCTTGTGCCTTTCTTATGAGCTTCTCATATCAACCTGCCATACCACA
AAAAAATTGCCATACAAATGATAAGGCCCTGAGCTTATTTATTGTCCAAGACATAAGAAACAAA
GAGTGATAGCTGATATACATATATAGTTTAGTATGAAACTAAAGAATGTAGAACCCAAAATTTC
CTAGCACTGGTGAGGGGATAAATGTACAGGATACTTCAAATTTTATATCACGCATAGAAAAACA
CAATATTGATAAAGATACTGAAAAATGGCAAGAACAGGAGAAGTTTTATACGATCTTTAAATAT
TGATAAATAATACATGGTTAATTGAAAGTACTAAGAATGAATTAACTCAACATTCTGATAGTCC
TGATCAGATTTGTAGCCTTATTTAGTAAATTTTAACTTCTTTGCTATGAGCAAGCATTGCCTGG
TGGTTAAAGTCACAGATTGCACACCCGTATAAAAATAAACTGCAAAGGAGCAGCTTAAATACCT
CAGTTCATTTGGTAAGTTTACTGTATGCTATATACAAGTGATCTCCAATATGGGACCTTTCATG
ATATCCAAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021