Detail information of BGIOSGA010316_circ_ig.3


General Information
CircRNA Name BGIOSGA010316_circ_ig.3
ID in PlantcircBase osi_circ_013253
Alias Chr03:32669595_32673959(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 25410249-25414617  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010316_circ_ig.1 BGIOSGA010316_circ_ig.2 BGIOSGA010316_circ_ig.4 BGIOSGA010316_circ_ig.5 BGIOSGA010316_circ_ig.6 BGIOSGA010316_circ_ig.7 BGIOSGA010316_circ_ig.8 BGIOSGA010316_circ_ig.9 BGIOSGA010316_circ_ig.10 BGIOSGA010316_circ_ig.11 BGIOSGA010316_circ_ig.12 BGIOSGA010316_circ_ig.13 BGIOSGA010316_circ_ig.14 BGIOSGA010316_circ_ig.15 BGIOSGA010316_circ_ig.16 BGIOSGA010316_circ_ig.17 BGIOSGA010316_circ_ig.18 BGIOSGA010316_circ_ig.19 BGIOSGA010316_circ_ig.20
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAATTACACCATGAACGTTGCTTACCACGTAGAGCAACAATCGACAGAAAGCCAAGCTTGCAC
TGTTGTTTCCAGCTTCCTATAGATTTTCCTGCAAAAccttatagaagaaatagatgatctccat
ggttatgggttgctcatcgtcactaatggagcttaagctaaagtggaggggggaacctacataa
ataaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATAGAAGAAATAGATGATCTCCATGGTTATGGGTTGCTCATCGTCACTAATGGAGCTTAA
GCTAAAGTGGAGGGGGGAACCTACATAAATAAACATCAATATTGAAGAAATTGATCAAACATTT
AAAATATTAGGATGAGATAAGCAATTTACCATTTATTTTGGTTAATTACAACACTTTGAGTTAA
CAGATATCACTTGAAAGAAAATAGGTAACATGATGACAAAAGTGAATCATCCAAAATAAGAATT
AACAGATATCACACCTGAAAATAAACTTACACTAATAAATATAAAAAATGCATTATCATTTGCA
GCGTAAGATATCAAACTTAGTATGAAATGTAATCCTCAGCACGAGACGTAGATGTGTACATTGT
ACTAACACAATCAGATGTAGACGTGCACATTACAGTACGACTGTGTACATATACCATCCTAATC
CTCAACATGAGAAATACGTGTGTATATATAGTACTATGTATAGTTCTATAAATCCTCCTACTTC
TTGTCACGAGGAAATCAGGATCAGAGGATCCATAACATGTCTAGTGCCTTGACAACGCTAAGAA
CTCCAACAAACCCCGCTAGCACAGATCCAACATGATATAAAGGGCATTAAGTGGAAATCCTCTA
TGTTTAACTTTGAAATCAACTAGTTCTTGAGAGGATTTACAAAATGTAGTTGAATAAATTTGGA
ATTCTTATAATGAAAAGGGTTCTAGTATTGACAAATGCGTTGGAGAATGCAAATGATAGGAAAA
AGGCTAAAAGGATAGAACATGAACTGAGATGGTGAATACAAATGGAAAAAAAAGGTGGCAAATG
AAGTATTCATATCAAGATTCGGATAGAGATGAGCCAAGAGAAGTTTGGAGTGGAGGGACTGAAG
TTTTTGTGTGCTCCTCTTTTTGGCCTGATGCTGATGGATGCAGGTTTTCTGCCCTAGCTTATTT
GTAGTTTTTTTGGTAGTCGATTTGGTCACACCTGAACCAACGAGAATTAGGCCAACACCTTTTT
TTTTCTTTCTTGAACTTAATTTCTCTTAATACAATGATGCATAATTCTTTGCCGTATTCCCTGA
AAATACTTTCACTGAACTAAAGTATATAAGAAGGAGAAATAGTGATCAAGCTAATAAATGAAAC
ATGGTGTAATAAAAAAAACCATAAACAAACATGTGAGATGGTGATAAAAAGCAATTGTAACTAT
ATAGCAGCTCATCCCTCATGCGGAGAGAGAGATAACGGGGAGAGGGGTGTTTATAATAAGGATG
AGTATGCATTCATGATAATCTTAACAACACTAAACAGCCTTGACTAACCTAGCCAACAGTTCTT
GTGTGCACAATCCAGAGGAAGGCACTAAATCACTACATGTCAATCGATAAAAGAGACAAATACT
TGGATGAGCCCCTACAATATGTCCACAGGCAAAAAAAGTTGACAGACTTGCTTAGGAGCACACC
AAAAGCCAGATCAAGTAAATACAATCACCAAACATCTATTTTGTTTTGTATTTTTTATACAACC
CCCTAATGGGAATAAACTAAGCATGTTCTTATTGATTTAGTTGATTGACATGGATGAGTCATTG
AAATATTTGTTAAATATAAATTACTTTCCATTAAAATATAATAACAAAAACAAGGAAGAAGGTT
TCCGCATGTAAAAGTACTAAAAAGATAATTCAATATGTATTCAAACTTTAGTAGTACCTCAAGA
GACATTTCATCGAGCAGTTCTTGAGCACCAAAAACCTCTAATGCGTTCCTCCTCTTCCTTGTTC
TCTTTGTATCCTTCTATTCTCTAGCCATAGCAGCAGTACACGACATCACATACATCATGAGGTC
AGCACAGAGCAGAAGCAAATCAACAACAAATCAAAAAGAGCAATGCGGTGGCAGTAACATAATA
GCAGCAACAACAACAACAACAACAAGGATACAAAGAGAACAAGGAAGAGGAGGAACGCATTAGT
GGTTTTTGGTGCTGCAGCGGAACAGCAAATCGTCCCTACCAAGCAAAGCAAGAGCATTGAACTA
ATTTTTTTTAGCAGACGGTAGGAGCAACCGCATAGGAGTTGGCAAGGGATGTGAAGACCTGAAA
AAATTTCAAAGCCTTGGCAAATCAGTTACTTACAACAACTGTCAGGCGACTCAAGCTCGTGCTG
CCAACCGTTGTTGCTACCATCTCTCCCCCTTTGTCCGCAGGAAACCGCCGCTATTGCCGCTACC
ATCTCTCCCCTTTGTCCACAAGAAACCGTCGCTATCCCCATCCTTTGCATCTGTAGTGATACAT
GGATGGGGATAAACGGAAGACAATGGATCATTTTATAAGATTTCATCTCTTCCTCCTCTTATGG
TGACGACGTTGCGGCCTGCTACCTAGTCCCGCTTTGCTCGCCCTAGGGTCACACTCGGCCCTCA
ACCCATGCTCACTGCGTTCCTTATGGCGAAGATGCGGAGCCGAGGACGACGACAGATCGACAGC
ACCGACAGCGGTGGGCAGGCAGCGATGTCAAGCGGAGTTGATGTGTAGCGGCCACAGCGCACTG
TGTTGAGGGGAGGTGGCGACATGGGACAAGGTGACGGTGCTGGGCTAAGGCGCACGGTGGCAGG
CCTGTTGGTGAGCCGGCGACGGCATTGGATGAGGGATGGCAGTGGCGATGAGCCACATGGGAAG
GAAGAGGGGTGGTTCAAGGCGGCGACGAAGTGGAGGCGTGGGGTGCTCAAAGCAGGGAGGTTGT
CCATTGGTTTCACTAATCCTACTACTAATCCATCTGCTAATCCAACTCACAATGTAGGTCGTTA
GACGAGAGGATCCAACGGTTAGGAATGATCTGGGTATATTTTGTTAATTCGTTTTGACTTTTTC
CGTAGCCAAACTTAACCAAGTTTTTTGATAACATATTTGTTTTGTATTTAATATGCTATGCTAA
CTTGATTAAATAAAGTTTGATTAGTCAAAACAACTTATAATATGAAACAGAGAGTATATGCCTA
CTAATTACTAATTGACTTACCATACTAGTAATATGAACGTGCTAACGCTACGGTGATATTTCAT
AAAACAATGGTGATAGACAGAAAAATAGAATCATGTTGAGAATCAAACAACTAATTATACTTGT
TGCTCAAAGTATATTGATTTAAAACCCATTGCATGATCAGTTTCACTTGAGCAATCAAAGCGTA
AGGATTCTTTGAAAAATAAAATCAACCACATACAACATTAGTGGGAGACCATAGTTTACAGGGT
CAATAATCATGTTTTCTCCTTTTCTAGCCTCCAAAGATAGGAACATTGATTCAATTGTTTTTAA
AAGAGTAAAATACACAGCCGGTCCTTAAACTTGTAGGGATGTGTTATCTAGGTCCTCAAAATAC
AAATCCAGGTCCTAGAACTTGTCAAAGTGTATCATGTAGATCCCAAATCGTCACAGCTCCTCCA
GGATCCTACATGGCACTGATGTGGCAATGCCACACGGACATGACATGGCATAATATTGAATGAC
AAATGAGACCCACTTAAAAAAATTTCATTTCCCTTTTTTATTCTCTTTTTTTTCCTTTCTTCTC
CTTTTCTTGCTCTCACTGCAGCTATAGGCCACCGCTACACGGGTTGCTCAGGTCACAGAGAAAA
GAGAAGAGAATAAAAGAAAAAAAAAGAGAAGAAGAAAAGAAAAAAAAGGAAAAGGAAAATTTTT
AAATGCCACGTCACGTTCGTGTGGCACGCCACATCAGCGCCACGTAGGATTTTGGAGGAGTTGT
TGCGATTTGGGACCTATATGGCACACTTTGACAAGTTCTGGGAGTTGGATCTACATTTTGAGAG
TTTAGGGACTTAGATGACACACCTCTACAAGTTTAAGGACCGCCTGTGCACTTTACTCTTTTTC
TAAACTCCCAAGTTACTTTAGAAAGGTTGATTTTGAAGATCATCTGATTTCTAACCAACATTTT
TTAAGATGTCGGAGAGGTGGTTGAAAACCAAAGACATAAAAATTACATGATTTGGTACAAGACA
ATCAATTGTTAAGCATCCAAACTACCCTTCATCATGCTCAGAAGTAAAAGAGAGCTGAAACTCA
CAGATTCAGAAGTTTGGATCACTGAAGGCTGCAACATGGACTGTTCACTTCAGAAAAGAGTCGA
CACTTCAAATTTATCTACACTGATCACACAACCTAATAGATTCACCGGACACCAAACTAATGAC
ATATATTTTGACAAAATATGTAGCAGAGAAAGTACTAATCATTCATAAATTACACCATGAACGT
TGCTTACCACGTAGAGCAACAATCGACAGAAAGCCAAGCTTGCACTGTTGTTTCCAGCTTCCTA
TAGATTTTCCTGCAAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021