Detail information of BGIOSGA010316_circ_ig.10


General Information
CircRNA Name BGIOSGA010316_circ_ig.10
ID in PlantcircBase osi_circ_013260
Alias Chr03:32671315_32675487(MH63RS2), Chr03:32671315_32675487(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 25411969-25416145  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010316_circ_ig.1 BGIOSGA010316_circ_ig.2 BGIOSGA010316_circ_ig.3 BGIOSGA010316_circ_ig.4 BGIOSGA010316_circ_ig.5 BGIOSGA010316_circ_ig.6 BGIOSGA010316_circ_ig.7 BGIOSGA010316_circ_ig.8 BGIOSGA010316_circ_ig.9 BGIOSGA010316_circ_ig.11 BGIOSGA010316_circ_ig.12 BGIOSGA010316_circ_ig.13 BGIOSGA010316_circ_ig.14 BGIOSGA010316_circ_ig.15 BGIOSGA010316_circ_ig.16 BGIOSGA010316_circ_ig.17 BGIOSGA010316_circ_ig.18 BGIOSGA010316_circ_ig.19 BGIOSGA010316_circ_ig.20
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAAAACACCATGAACGTTGCTTACCACATAGAGCAACAATCGACAGAAAACCAGGCTTGCAC
TGTTGTTTCCAGCTTCCTACAGATTTTCCTGCAAAAcctcaagagacatttcatcgagcagttc
ttgagcaccaaaaacctctaatgcgttcctcctcttccttgttctctttgtatccttctattct
ctagccat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCAAGAGACATTTCATCGAGCAGTTCTTGAGCACCAAAAACCTCTAATGCGTTCCTCCTCTT
CCTTGTTCTCTTTGTATCCTTCTATTCTCTAGCCATAGCAGCAGTACACGACATCACATACATC
ATGAGGTCAGCACAGAGCAGAAGCAAATCAACAACAAATCAAAAAGAGCAATGCGGTGGCAGTA
ACATAATAGCAGCAACAACAACAACAACAACAAGGATACAAAGAGAACAAGGAAGAGGAGGAAC
GCATTAGTGGTTTTTGGTGCTGCAGCGGAACAGCAAATCGTCCCTACCAAGCAAAGCAAGAGCA
TTGAACTAATTTTTTTTAGCAGACGGTAGGAGCAACCGCATAGGAGTTGGCAAGGGATGTGAAG
ACCTGAAAAAATTTCAAAGCCTTGGCAAATCAGTTACTTACAACAACTGTCAGGCGACTCAAGC
TCGTGCTGCCAACCGTTGTTGCTACCATCTCTCCCCCTTTGTCCGCAGGAAACCGCCGCTATTG
CCGCTACCATCTCTCCCCTTTGTCCACAAGAAACCGTCGCTATCCCCATCCTTTGCATCTGTAG
TGATACATGGATGGGGATAAACGGAAGACAATGGATCATTTTATAAGATTTCATCTCTTCCTCC
TCTTATGGTGACGACGTTGCGGCCTGCTACCTAGTCCCGCTTTGCTCGCCCTAGGGTCACACTC
GGCCCTCAACCCATGCTCACTGCGTTCCTTATGGCGAAGATGCGGAGCCGAGGACGACGACAGA
TCGACAGCACCGACAGCGGTGGGCAGGCAGCGATGTCAAGCGGAGTTGATGTGTAGCGGCCACA
GCGCACTGTGTTGAGGGGAGGTGGCGACATGGGACAAGGTGACGGTGCTGGGCTAAGGCGCACG
GTGGCAGGCCTGTTGGTGAGCCGGCGACGGCATTGGATGAGGGATGGCAGTGGCGATGAGCCAC
ATGGGAAGGAAGAGGGGTGGTTCAAGGCGGCGACGAAGTGGAGGCGTGGGGTGCTCAAAGCAGG
GAGGTTGTCCATTGGTTTCACTAATCCTACTACTAATCCATCTGCTAATCCAACTCACAATGTA
GGTCGTTAGACGAGAGGATCCAACGGTTAGGAATGATCTGGGTATATTTTGTTAATTCGTTTTG
ACTTTTTCCGTAGCCAAACTTAACCAAGTTTTTTGATAACATATTTGTTTTGTATTTAATATGC
TATGCTAACTTGATTAAATAAAGTTTGATTAGTCAAAACAACTTATAATATGAAACAGAGAGTA
TATGCCTACTAATTACTAATTGACTTACCATACTAGTAATATGAACGTGCTAACGCTACGGTGA
TATTTCATAAAACAATGGTGATAGACAGAAAAATAGAATCATGTTGAGAATCAAACAACTAATT
ATACTTGTTGCTCAAAGTATATTGATTTAAAACCCATTGCATGATCAGTTTCACTTGAGCAATC
AAAGCGTAAGGATTCTTTGAAAAATAAAATCAACCACATACAACATTAGTGGGAGACCATAGTT
TACAGGGTCAATAATCATGTTTTCTCCTTTTCTAGCCTCCAAAGATAGGAACATTGATTCAATT
GTTTTTAAAAGAGTAAAATACACAGCCGGTCCTTAAACTTGTAGGGATGTGTTATCTAGGTCCT
CAAAATACAAATCCAGGTCCTAGAACTTGTCAAAGTGTATCATGTAGATCCCAAATCGTCACAG
CTCCTCCAGGATCCTACATGGCACTGATGTGGCAATGCCACACGGACATGACATGGCATAATAT
TGAATGACAAATGAGACCCACTTAAAAAAATTTCATTTCCCTTTTTTATTCTCTTTTTTTTCCT
TTCTTCTCCTTTTCTTGCTCTCACTGCAGCTATAGGCCACCGCTACACGGGTTGCTCAGGTCAC
AGAGAAAAGAGAAGAGAATAAAAGAAAAAAAAAGAGAAGAAGAAAAGAAAAAAAAGGAAAAGGA
AAATTTTTAAATGCCACGTCACGTTCGTGTGGCACGCCACATCAGCGCCACGTAGGATTTTGGA
GGAGTTGTTGCGATTTGGGACCTATATGGCACACTTTGACAAGTTCTGGGAGTTGGATCTACAT
TTTGAGAGTTTAGGGACTTAGATGACACACCTCTACAAGTTTAAGGACCGCCTGTGCACTTTAC
TCTTTTTCTAAACTCCCAAGTTACTTTAGAAAGGTTGATTTTGAAGATCATCTGATTTCTAACC
AACATTTTTTAAGATGTCGGAGAGGTGGTTGAAAACCAAAGACATAAAAATTACATGATTTGGT
ACAAGACAATCAATTGTTAAGCATCCAAACTACCCTTCATCATGCTCAGAAGTAAAAGAGAGCT
GAAACTCACAGATTCAGAAGTTTGGATCACTGAAGGCTGCAACATGGACTGTTCACTTCAGAAA
AGAGTCGACACTTCAAATTTATCTACACTGATCACACAACCTAATAGATTCACCGGACACCAAA
CTAATGACATATATTTTGACAAAATATGTAGCAGAGAAAGTACTAATCATTCATAAATTACACC
ATGAACGTTGCTTACCACGTAGAGCAACAATCGACAGAAAGCCAAGCTTGCACTGTTGTTTCCA
GCTTCCTATAGATTTTCCTGCAAAACTATAAAACTGGTGAATTTCAACACCAAACATGGCCAAT
GATATTTAATCATGAAAAATCGGTATAAATCTAACGGCCTCATCTTTTCGCTTATGCTTATTAG
CCAGAATTTAAATTTTCAACCTTAAATTTGGAGTTGATTTTGGGTTTTTTTTCACCGTAGTTTA
TTTTTTAGCCTTTGCTTTTAGATCGTTAAGAACACGTACATAAAATTTTATTCACAAATTATTT
TTCGTTTGCAAATAAGCCATTTGGCTTATTCCTCAAATAAGCCAAACAATGGGGTCGTAAAAGG
CTAACCTCAATAAATGGAAATCTTCATTGATCATGATGAATAAAAAACATGACCAGAGCTACTA
CTATACATAAATTAAAAACAATATTTTTTTTATAAAAAAACACTACTAATTGGTGCATCCAACT
CACATTAATAGATAACTCAGTACAAAAATAGGAACATTGATTCAATAGAATAAGATGCTAATAG
CTCTCCCATCCCTAATCTCCCAAGTTACTTTAGGAAGGTTGACTTTGAAGATCGTCTGATTTCT
AACCAACATCTTTTAAGGTGTTGGAGAGGTTGTTGTAAAACATTAAAAATTACATGATTTAGTA
TAATACATTCAATTATTAAGCATCCTGTCACGAACCAGGGGGCTGCTGGAACAACAGAGTCAGC
TTCTGCTCCTAATCTCATACCATTTGTCGTGATCTATGAAGTAAAAATTGTCATTCAGATAATT
AATATGAAGAGAGGAAACCTTATAATACCTTCTAGTGGCAGGCCACACAGTTCTAATAGCCTTC
ACCTCCACTTTTGCAGCAAGGTGGAAGTAATTTTACAAAAAATTAACTAGGTTAGTAGAGTGCA
GATGTTCAGTGCAAAATTACTCACCAGTTGTCTTCCCATAAAACAGAAAAAGTAGTTGAGCCTT
ATAAAATAAAAACTTTGATGCAGGGTGTTCAGCATTATTGGTGATTAGGAAATAGTTCCAGTTC
TAAACCAGAGATCTACCGCTGTTTACAAACTGACCAGAATCAAATCTATGGAGCTTTCCCCAGA
AAATTTAGAATGCATATGTTTTACACACTTTTTCAAGAACACACGAATGTACTGCATGCCCTTC
ATACAAAGAGGAAGATAGGGTTAGACATATCGTATTACTATATCTGAATAATAAGAGGATGATA
TAGTTAAAGCCCTTCATCATGCTCAGAAGTAAAAGAGAGCTGAAACTCACTGATTCAGAAGTTT
GGATCACTGAAGGCTGCAACATGGACTGTTCACTTCAGAAAAGATTCGACACTTCAAATTTATC
TACACTGATCACACAACCTTATTTCGCTGGACACCAATCTAATGACATATATTTTGACAAAATA
TGTAGCAGAGAAAGTACTAATCATTCATAAATTACATCATGACCTATAAAAACACCATGAACGT
TGCTTACCACATAGAGCAACAATCGACAGAAAACCAGGCTTGCACTGTTGTTTCCAGCTTCCTA
CAGATTTTCCTGCAAAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021