Detail information of BGIOSGA010316_circ_ig.17


General Information
CircRNA Name BGIOSGA010316_circ_ig.17
ID in PlantcircBase osi_circ_013267
Alias Chr03:32673885_32678108(MH63RS2), Chr03:32673885_32678108(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 25414543-25418770  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA010316_circ_ig.1 BGIOSGA010316_circ_ig.2 BGIOSGA010316_circ_ig.3 BGIOSGA010316_circ_ig.4 BGIOSGA010316_circ_ig.5 BGIOSGA010316_circ_ig.6 BGIOSGA010316_circ_ig.7 BGIOSGA010316_circ_ig.8 BGIOSGA010316_circ_ig.9 BGIOSGA010316_circ_ig.10 BGIOSGA010316_circ_ig.11 BGIOSGA010316_circ_ig.12 BGIOSGA010316_circ_ig.13 BGIOSGA010316_circ_ig.14 BGIOSGA010316_circ_ig.15 BGIOSGA010316_circ_ig.16 BGIOSGA010316_circ_ig.18 BGIOSGA010316_circ_ig.19 BGIOSGA010316_circ_ig.20
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGCAAAGGAGCAGCTTAAATACCTCAGTTCATTTGGTAAGTTTACTGTATGCTATATACAAG
TGATCTCCAATATGGGACCTTTCATGATATCCAAACccacgtagagcaacaatcgacagaaagc
caagcttgcactgttgtttccagcttcctatagattttcctgcaaaactataaaactggtgaat
ttcaacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACGTAGAGCAACAATCGACAGAAAGCCAAGCTTGCACTGTTGTTTCCAGCTTCCTATAGATT
TTCCTGCAAAACTATAAAACTGGTGAATTTCAACACCAAACATGGCCAATGATATTTAATCATG
AAAAATCGGTATAAATCTAACGGCCTCATCTTTTCGCTTATGCTTATTAGCCAGAATTTAAATT
TTCAACCTTAAATTTGGAGTTGATTTTGGGTTTTTTTTCACCGTAGTTTATTTTTTAGCCTTTG
CTTTTAGATCGTTAAGAACACGTACATAAAATTTTATTCACAAATTATTTTTCGTTTGCAAATA
AGCCATTTGGCTTATTCCTCAAATAAGCCAAACAATGGGGTCGTAAAAGGCTAACCTCAATAAA
TGGAAATCTTCATTGATCATGATGAATAAAAAACATGACCAGAGCTACTACTATACATAAATTA
AAAACAATATTTTTTTTATAAAAAAACACTACTAATTGGTGCATCCAACTCACATTAATAGATA
ACTCAGTACAAAAATAGGAACATTGATTCAATAGAATAAGATGCTAATAGCTCTCCCATCCCTA
ATCTCCCAAGTTACTTTAGGAAGGTTGACTTTGAAGATCGTCTGATTTCTAACCAACATCTTTT
AAGGTGTTGGAGAGGTTGTTGTAAAACATTAAAAATTACATGATTTAGTATAATACATTCAATT
ATTAAGCATCCTGTCACGAACCAGGGGGCTGCTGGAACAACAGAGTCAGCTTCTGCTCCTAATC
TCATACCATTTGTCGTGATCTATGAAGTAAAAATTGTCATTCAGATAATTAATATGAAGAGAGG
AAACCTTATAATACCTTCTAGTGGCAGGCCACACAGTTCTAATAGCCTTCACCTCCACTTTTGC
AGCAAGGTGGAAGTAATTTTACAAAAAATTAACTAGGTTAGTAGAGTGCAGATGTTCAGTGCAA
AATTACTCACCAGTTGTCTTCCCATAAAACAGAAAAAGTAGTTGAGCCTTATAAAATAAAAACT
TTGATGCAGGGTGTTCAGCATTATTGGTGATTAGGAAATAGTTCCAGTTCTAAACCAGAGATCT
ACCGCTGTTTACAAACTGACCAGAATCAAATCTATGGAGCTTTCCCCAGAAAATTTAGAATGCA
TATGTTTTACACACTTTTTCAAGAACACACGAATGTACTGCATGCCCTTCATACAAAGAGGAAG
ATAGGGTTAGACATATCGTATTACTATATCTGAATAATAAGAGGATGATATAGTTAAAGCCCTT
CATCATGCTCAGAAGTAAAAGAGAGCTGAAACTCACTGATTCAGAAGTTTGGATCACTGAAGGC
TGCAACATGGACTGTTCACTTCAGAAAAGATTCGACACTTCAAATTTATCTACACTGATCACAC
AACCTTATTTCGCTGGACACCAATCTAATGACATATATTTTGACAAAATATGTAGCAGAGAAAG
TACTAATCATTCATAAATTACATCATGACCTATAAAAACACCATGAACGTTGCTTACCACATAG
AGCAACAATCGACAGAAAACCAGGCTTGCACTGTTGTTTCCAGCTTCCTACAGATTTTCCTGCA
AAACTATGAAACTGGTGAATTTTCAACACCAAACATGGCCAATGATATGTAATCATGAAAAATC
GGTATAAATCTAAAAGGCTAACCTCAATAAATGAAAATCTTCATTGATCATGATGGATAAAAAA
ACATGATCAGAGCTACTACTATACATAAATTAAAAACAATACTTTTTGATTAAAAAAACAGTAC
TAATTGGTGCATCCAACTAACATTAATAGGTAACTCAGTACAATTAGCCCAGCAGCCATTTTTC
CTAGCCACAACCTTTACCACAATGCATTTTCTACAATTGGCCTCATTTTTGTTTTGAAAGCAAT
AATGAGGACAGAAAACATTGGGAGCACAATTTAATTTTATGTCTGGAACAAATTACGACCTGGA
AAAATCAGAAATGCATTTGCCGATAAAAAAAAAGCCAGTGAAGTTGCAGCCAGGTATTTGCCAT
GCCGCTGCCATAGCCTAGCACTCTATAAGTATATGGCCAACAGAAATTGTAAGCATAGCCTAGC
ACTCTGTAAGTATATGGCCAACAGAAATTGTAAATATCAATTAATTCAACAAGTATATGACAGT
CAATACTTCCATTGTAGCCTAAAAACAAACATATAAGAAAAGAATGCATCGACGATTATATTCT
CTAGCGTGTTCAGACTTTCGATATACATATTGACAAGGCCTCACATAAATTTGAAAGTGAGTAT
TAAACTAAGTTCATAAGTGATCTTAAAACAAGTAAAAGAAGACCATTTGGAGTGCGTCTTCTGG
AACCCCTGATTGCCAAGCTTTGTAGCATGATTCTTCAAAGGAGCAATCAACTTCAAATGTCTGG
TCCAAAATTTCCCCTCCTGATATTCATAATACATAGAACTTGTGTTCATCAAGGGATAAACCTA
GTGAATTACTGTTGAAACACAGGAAACAAATTATCTCCAGAGCATAAGGCCAATCTCACAGATA
GAGGTACAAAACCTTGATTAAGTCTAACATTCTACAGTGCGGACTCGATATGCACACATGACAG
TCCATTTCTATTTTAGAGAGAAATCAAACTTCATGTAAATTTTCATTGATGTTGAAAATGAAAA
ATAAGCACCAGTTTACAATAATGCACATAGAATCTATGTTGGCAAGAAATAAATCATTGCAACG
GAGAAGAAACCAAGCATCATTATTATTTCCATACAAAAAAAGAGTTAGAGAAACATCAGAAATT
CATTGAGTAGGACCACATCAATATCTTTATATTTGATGAATAATATCTTTACATTGTTAATGAA
AGTACATCATATATATTGTGGTAAAAGCAGTTCTCAAATGATTTCCAAAAAAAGAAAAAGAAAA
GAAAAGAAAAGCGTATAGCACCCTCAAACTATCACCAACATGACACACTTCCGATGTTCATGGA
AGTATAGGCAAATTATCATGGGGTGTGCAATATACCAGCACCCTGAAGCACCATACATAGCCCT
TGCACACTCTGGAAACAATTGATCCCAATAAATCCCAAAAGGATATGGGTGAAGTGATTCCACA
CTAATTAACAGAGTTGTATTGTATAAAAAACAAACAATAATCAATATTGATGCAGAAGTACTTA
ATAGCACCAATTGTGGTATACATGGTTTTGAGATCTGCAGTTAAATTACAGCAGTTACACCAAT
TGAGTTTCACAAATGAAAACAACAGACCTAGCTACAGTAGTACAGTGTACATCTAGTGTAAACT
AAAATGCAATCTTAAAATAAAATCATGTTTACCTTCAAGCCAGGGCAGATGGATTGAAATTCAA
TCTTTAAGATTCATAAAAATATTGCCCCTCAAATAATTCCTAGGGTGACAAATACATACTGTAT
ACAGAACTAAAAAACTGGAGTCATTGCCTCACATCTTTTTTGAGAAGGTTGAACCAACTTAGGA
GCAATTTAAGTAAACAATATTCATTCAAACTCATTTTCTTTTCTGAATCTATGACCAAAATAAA
CATGGTTTGTTGAAATTTAGTGATCCAGCAACGGGAACAATATTTATCATATAAACGCACCTTA
ATGAGGACAAAGCTTGTGCCTTTCTTATGAGCTTCTCATATCAACCTGCCATACCACAAAAAAA
TTGCCATACAAATGATAAGGCCCTGAGCTTATTTATTGTCCAAGACATAAGAAACAAAGAGTGA
TAGCTGATATACATATATAGTTTAGTATGAAACTAAAGAATGTAGAACCCAAAATTTCCTAGCA
CTGGTGAGGGGATAAATGTACAGGATACTTCAAATTTTATATCACGCATAGAAAAACACAATAT
TGATAAAGATACTGAAAAATGGCAAGAACAGGAGAAGTTTTATACGATCTTTAAATATTGATAA
ATAATACATGGTTAATTGAAAGTACTAAGAATGAATTAACTCAACATTCTGATAGTCCTGATCA
GATTTGTAGCCTTATTTAGTAAATTTTAACTTCTTTGCTATGAGCAAGCATTGCCTGGTGGTTA
AAGTCACAGATTGCACACCCGTATAAAAATAAACTGCAAAGGAGCAGCTTAAATACCTCAGTTC
ATTTGGTAAGTTTACTGTATGCTATATACAAGTGATCTCCAATATGGGACCTTTCATGATATCC
AAAC
Conservation Information
Conserved circRNAs osa_circ_021619
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021