Detail information of Os11g0572100_circ_g.4


General Information
CircRNA Name Os11g0572100_circ_g.4
ID in PlantcircBase osa_circ_009647
Alias NA
Organism Oryza sativa
Position chr11: 21445633-21445889  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0572100
Parent gene annotation Similar to DNA ligase (EC 6.5.1.2). (Os11t0572100-01);Similar to
DNA ligase (EC 6.5.1.2). (Os11t0572100-02);Similar to Replicati
on factor C 110 kDa subunit. (Os11t0572100-03);Similar to Replic
ation factor C 110 kDa subunit. (Os11t0572100-04)
Parent gene strand +
Alternative splicing Os11g0572100_circ_g.3 Os11g0572100_circ_g.5 Os11g0572100_circ_g.6 Os11g0572100_circ_g.7 Os11g0572100_circ_g.8
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AC-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCCAGCGATTGTTGTATCCATTGCTGACATCATCTGATGACTAAGTTTTATTTGATTTATT
TGTTTGATATTAACATTTCGCAGGTTGTTTATGCTTgtaactgaaagcgtaaaaatgcttctta
gttgtatagcgcatgcacaatcctgcttagcataacctaactattagatacttgtattctcaaa
gttgcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 257
Transcript exons: 21445633-21445889
GTAACTGAAAGCGTAAAAATGCTTCTTAGTTGTATAGCGCATGCACAATCCTGCTTAGCATAAC
CTAACTATTAGATACTTGTATTCTCAAAGTTGCATGAATTTGAGACATGATTCTAGTGTTCATT
GTGTCTTTTACCCATTGTAGATGCTAGCTTTATCCAGCGATTGTTGTATCCATTGCTGACATCA
TCTGATGACTAAGTTTTATTTGATTTATTTGTTTGATATTAACATTTCGCAGGTTGTTTATGCT
T

Genomic sequence GTAACTGAAAGCGTAAAAATGCTTCTTAGTTGTATAGCGCATGCACAATCCTGCTTAGCATAAC
CTAACTATTAGATACTTGTATTCTCAAAGTTGCATGAATTTGAGACATGATTCTAGTGTTCATT
GTGTCTTTTACCCATTGTAGATGCTAGCTTTATCCAGCGATTGTTGTATCCATTGCTGACATCA
TCTGATGACTAAGTTTTATTTGATTTATTTGTTTGATATTAACATTTCGCAGGTTGTTTATGCT
T
Conservation Information
Conserved circRNAs NA
PMCS 0.262216602
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017