Detail information of BGIOSGA031532_circ_g.3


General Information
CircRNA Name BGIOSGA031532_circ_g.3
ID in PlantcircBase osi_circ_008614
Alias Chr10:22037842_22038264(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19165426-19165847  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method find_circ
Parent gene BGIOSGA031532
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031532_circ_g.1 BGIOSGA031532_circ_g.2 BGIOSGA031532_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA031532-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAAAATAGTAAAACACATTAGGACCAATAATTTCTTTAGAATCATGGATTTAACAGTTTGAA
ATGATCTACAAAGCTAAAAGTATAACTTATACAGACcctgaaaaatcgatcaacttgcaatgag
acaattgcttgtacagcaggtttacttatatcacaacacataaacagctgaaaatattgcaggc
aatcatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAAAATCGATCAACTTGCAATGAGACAATTGCTTGTACAGCAGGTTTACTTATATCACAA
CACATAAACAGCTGAAAATATTGCAGGCAATCATGCTTTTGCACAAGCTGCAAATGCATGTTTC
AATCTTAAACTCCATCATCTGTTTACAAGTACCCAAATAGTAAAAAAGGAAAAAGAACACTTGC
AAAGCATGCCCTGAGGAGGGGTGCCTGATAAAAATGAGTCTCATGATACATACCGTAGATTTTG
AGGTTTAATATCTCGATGCCAGACACCAACAACACGATGGATATATGCAAGGGCACGGCAAATC
TATGAAAAATAGTAAAACACATTAGGACCAATAATTTCTTTAGAATCATGGATTTAACAGTTTG
AAATGATCTACAAAGCTAAAAGTATAACTTATACAGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021