Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009424_circ_g.7 |
ID in PlantcircBase | zma_circ_002727 |
Alias | circ2733 |
Organism | Zea mays |
Position | chr8: 63800629-63804104 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d009424 |
Parent gene annotation |
Cyclin/Brf1-like TBP-binding protein |
Parent gene strand | + |
Alternative splicing | Zm00001d009424_circ_g.1 Zm00001d009424_circ_g.2 Zm00001d009424_circ_g.3 Zm00001d009424_circ_g.4 Zm00001d009424_circ_g.5 Zm00001d009424_circ_g.6 Zm00001d009424_circ_g.8 Zm00001d009424_circ_g.9 Zm00001d009424_circ_g.10 |
Support reads | 3 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d009424_T005:10 Zm00001d009424_T010:10 Zm00001d009424_T001:9 Zm00001d009424_T003:10 Zm00001d009424_T016:11 Zm00001d009424_T008:8 Zm00001d009424_T012:10 Zm00001d009424_T017:10 Zm00001d009424_T014:9 Zm00001d009424_T004:10 Zm00001d009424_T002:8 Zm00001d009424_T011:9 Zm00001d009424_T009:8 Zm00001d009424_T013:10 Zm00001d009424_T007:9 Zm00001d009424_T006:10 Zm00001d009424_T015:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.158714698 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |