Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009424_circ_g.10 |
ID in PlantcircBase | zma_circ_009617 |
Alias | Zm08circ00030, GRMZM2G109651_C4 |
Organism | Zea mays |
Position | chr8: 63813122-63813714 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d009424 |
Parent gene annotation |
Cyclin/Brf1-like TBP-binding protein |
Parent gene strand | + |
Alternative splicing | Zm00001d009424_circ_g.1 Zm00001d009424_circ_g.2 Zm00001d009424_circ_g.3 Zm00001d009424_circ_g.4 Zm00001d009424_circ_g.5 Zm00001d009424_circ_g.6 Zm00001d009424_circ_g.7 Zm00001d009424_circ_g.8 Zm00001d009424_circ_g.9 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009424_T013:4 Zm00001d009424_T017:4 Zm00001d009424_T003:4 Zm00001d009424_T005:3 Zm00001d009424_T016:4 Zm00001d009424_T009:4 Zm00001d009424_T007:4 Zm00001d009424_T001:4 Zm00001d009424_T002:4 Zm00001d009424_T006:4 Zm00001d009424_T015:4 Zm00001d009424_T010:4 Zm00001d009424_T014:4 Zm00001d009424_T011:4 Zm00001d009424_T004:4 Zm00001d009424_T012:4 Zm00001d009424_T008:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.155724325 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
63813552-63813711(+) 63813350-63813507(-) |
Potential amino acid sequence |
MNKEYLEEQAAKEALAAELAARGIVVEEGKKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCE GNADPESLSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALAAELAARGIVVEEG KKALSGDKSSTIGSGGLINDSVPPKDPEEGGENCEGNADPESLSDIDDVEVDWYLHNEEETQYK KIIWEEMNKEYLEEQAAKEALAAELAARGIVVEEGKKALSGDKSSTIGSGGLINDSVPPKDPEE GGENCEGNADPESLSDIDDVEVDWYLHNEEETQYKKIIWEEMNKEYLEEQAAKEALAAELAARG IVVEEGKK(+) MSERLSGSALPSQFSPPSSGSFGGTESFMSPPDPIVEDLSPLKAFFPSSTTIPLAANSAAKASL AACSSRYSLFISSQIIFLYCVSSSL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |