Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009424_circ_g.5 |
ID in PlantcircBase | zma_circ_009614 |
Alias | zma_circ_0002986, GRMZM2G109651_C1 |
Organism | Zea mays |
Position | chr8: 63800622-63804104 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d009424 |
Parent gene annotation |
Cyclin/Brf1-like TBP-binding protein |
Parent gene strand | + |
Alternative splicing | Zm00001d009424_circ_g.1 Zm00001d009424_circ_g.2 Zm00001d009424_circ_g.3 Zm00001d009424_circ_g.4 Zm00001d009424_circ_g.6 Zm00001d009424_circ_g.7 Zm00001d009424_circ_g.8 Zm00001d009424_circ_g.9 Zm00001d009424_circ_g.10 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009424_T009:8 Zm00001d009424_T012:10 Zm00001d009424_T011:9 Zm00001d009424_T013:10 Zm00001d009424_T002:8 Zm00001d009424_T001:9 Zm00001d009424_T008:8 Zm00001d009424_T006:10 Zm00001d009424_T016:11 Zm00001d009424_T003:10 Zm00001d009424_T005:10 Zm00001d009424_T014:9 Zm00001d009424_T004:10 Zm00001d009424_T007:9 Zm00001d009424_T015:10 Zm00001d009424_T010:10 Zm00001d009424_T017:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107187982 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
63800675-63800636(+) |
Potential amino acid sequence |
MIYCTHCADYCPSIKDPDKGYICCGTCGKVLDQEVYTDEPTFVKDNTGQSRLAGSILASIESGY SISHQRTLDKGRDEIRQIVNNLHVSGGETVVSKAYRFYELAVDRNFTRGRRTSHVAAACLYIAC RLGAVFLQLCQVLLLADHPVVQKLVDPSLFIHRFTKCLLGRRDNAVSDTAFSREVSDTALRIVA SMKRDWMQTGRKPSGLCGAALYIAALSHGCNYTKADIVSVVHVCEATLTKRLIEFENTDSGSLT FHRLV*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |